RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FLRT2O43155 660 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 MRPS14O60783 128 aaKnown RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 RFPL3O75679 317 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 MAPK9P45984 424 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 CAV3P56539 151 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 ISL1P61371 349 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 Q6ZSR9 355 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 PAQR7Q86WK9 346 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 SYNPOQ8N3V7 929 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 NMNAT1Q9HAN9 279 aaPredicted RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 TNFRSF12AQ9NP84 129 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 IL20RAQ9UHF4 553 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 ENPP4Q9Y6X5 453 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 ASCC3Q8N3C0 2202 aaKnown RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 GTPBP1O00178 669 aaKnown RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 ATXN1LP0C7T5 689 aaKnown RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 C8orf89P0DMQ9 161 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 CBSLP0DN79 551 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 SDC1P18827 310 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 PYCR1P32322 319 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 CBSP35520 551 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 IER5LQ5T953 404 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 WASH2PQ6VEQ5 465 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 GDPGP1Q6ZNW5 385 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 STX12Q86Y82 276 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 INO80EQ8NBZ0 244 aaPredicted RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 BEST4Q8NFU0 473 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 TUBB1Q9H4B7 451 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 CKLFQ9UBR5 152 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 NOX1Q9Y5S8 564 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 DISC1C4P0D8 188 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 RASGRP1O95267 797 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 CYP17A1P05093 508 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 CA3P07451 260 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 ADORA3P0DMS8 318 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 HMGCLP35914 325 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 MTNR1AP48039 350 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 HK3P52790 923 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 CDK10Q15131 360 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 MICAQ29983 383 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 CTU2Q2VPK5 515 aaKnown RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 SYT6Q5T7P8 510 aaPredicted RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 HLA-DQA1Q5Y7H0 255 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 FAM205BPQ63HN1 556 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 Q6ZVL8 140 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 GAREM2Q75VX8 874 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 NUDT13Q86X67 352 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 PTRH1Q86Y79 214 aaKnown RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 ZNF676Q8N7Q3 588 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 DNAJC5GQ8N7S2 189 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 SPERTQ8NA61 448 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 RIT1Q92963 219 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 PPP1R14AQ96A00 147 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 ISL2Q96A47 359 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 RNF31Q96EP0 1072 aa14.63□□□□□ -0.07
SHH-201ENST00000297261 ZNF300Q96RE9 604 aaPredicted RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 TSNAXQ99598 290 aaKnown RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 RC3H2Q9HBD1 1191 aaKnown RBP14.63□□□□□ -0.07
SHH-201ENST00000297261 LEFTY1O75610 366 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 CPNE6O95741 557 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ARFIP1P53367 373 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ERVFC1P60507 584 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 SELENBP1Q13228 472 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 SCGB2B2Q4G0G5 96 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 KIAA1324Q6UXG2 1013 aaKnown RBP14.62□□□□□ -0.07
SHH-201ENST00000297261 ARMC10Q8N2F6 343 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 SIMC1Q8NDZ2 872 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 MDGA1Q8NFP4 955 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 OR2T11Q8NH01 316 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 RNF167Q9H6Y7 350 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 TRPV4Q9HBA0 871 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 CUEDC1Q9NWM3 386 aaPredicted RBP14.62□□□□□ -0.07
SHH-201ENST00000297261 UPB1Q9UBR1 384 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 GRXCR2A6NFK2 248 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 METTL15A6NJ78 407 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 FAAHO00519 579 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 F11P03951 625 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 VAMP1P23763 118 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ITPKBP27987 946 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 VIPR2P41587 438 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 MAGEA12P43365 314 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 SKP1P63208 163 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 FADDQ13158 208 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 TAF13Q15543 124 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ODF4Q2M2E3 257 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 FLYWCH1Q4VC44 716 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 FAM124AQ86V42 546 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 JAZF1Q86VZ6 243 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ADGRG2Q8IZP9 1017 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 MRPL43Q8N983 215 aaKnown RBP14.62□□□□□ -0.07
SHH-201ENST00000297261 EXO5Q9H790 373 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 NDOR1Q9UHB4 597 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 GMFGO60234 142 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 MT-ND5P03915 603 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 HNRNPA1P09651 372 aaKnown RBP eCLIP14.62□□□□□ -0.07
SHH-201ENST00000297261 TIA1P31483 386 aaKnown RBP eCLIP14.62□□□□□ -0.07
SHH-201ENST00000297261 OR3A3P47888 321 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 SELENOWP63302 87 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 PRAMEF14Q5SWL7 426 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 PRAMEF13Q5VWM6 474 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms