RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GPR62Q9BZJ7 368 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 SPRTNQ9H040 489 aaPredicted RBP13.62□□□□□ -0.23
SDC1-201ENST00000254351 BRD9Q9H8M2 597 aa13.62□□□□□ -0.23
SDC1-201ENST00000254351 ZNF282Q9UDV7 671 aaPredicted RBP13.62□□□□□ -0.23
SDC1-201ENST00000254351 A0A0B4J203 849 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 RTCAO00442 366 aaKnown RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 RECKO95980 971 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 EPHX1P07099 455 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 STOMP27105 288 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 PPP3R1P63098 170 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 LGALSLQ3ZCW2 172 aaPredicted RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 MORN1Q5T089 497 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 GARNL3Q5VVW2 1013 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 PRSS55Q6UWB4 352 aaPredicted RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 SYT9Q86SS6 491 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 SMAP2Q8WU79 429 aaPredicted RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 KCNK12Q9HB15 430 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 C1GALT1Q9NS00 363 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 LHX3Q9UBR4 397 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 ELF5Q9UKW6 265 aaPredicted RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 PROM1O43490 865 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 SLC43A1O75387 559 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 CLDN11O75508 207 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 NAGAP17050 411 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 RHCEP18577 417 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 ELAVL4P26378 380 aaKnown RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 ETV3P41162 512 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 OR10A3P58181 314 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 MPEG1Q2M385 716 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 TCTN3Q6NUS6 607 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 TMEM81Q6P7N7 255 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 TRIM40Q6P9F5 258 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 GDPGP1Q6ZNW5 385 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 TPGS1Q6ZTW0 290 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 LRRC70Q7Z2Q7 622 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 KLBQ86Z14 1044 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 OR7G3Q8NG95 312 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 OR2T35Q8NGX2 323 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 ZFPM2Q8WW38 1151 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 GCDHQ92947 438 aaPredicted RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 POP5Q969H6 163 aaKnown RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 CAPNS2Q96L46 248 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 ZNF582Q96NG8 517 aaPredicted RBP13.61□□□□□ -0.23
SDC1-201ENST00000254351 NLNQ9BYT8 704 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 ERVMER34-1Q9H9K5 563 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 DIABLOQ9NR28 239 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 NLGN3Q9NZ94 848 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 CNIH4Q9P003 139 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 PTGFRNQ9P2B2 879 aa13.61□□□□□ -0.23
SDC1-201ENST00000254351 A0A0G2JN53 185 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 HYAL3O43820 417 aaPredicted RBP13.6□□□□□ -0.23
SDC1-201ENST00000254351 HCN1O60741 890 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 SLC16A8O95907 504 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 ALPPL2P10696 532 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 ZNF8P17098 575 aaPredicted RBP13.6□□□□□ -0.23
SDC1-201ENST00000254351 DNASE1P24855 282 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 SPAM1P38567 509 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 CPT1AP50416 773 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 GATMP50440 423 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 PRKAG1P54619 331 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 SF3A2Q15428 464 aaKnown RBP13.6□□□□□ -0.23
SDC1-201ENST00000254351 PLK5Q496M5 336 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 C11orf96Q7Z7L8 435 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 ZNF740Q8NDX6 193 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 DUSP18Q8NEJ0 188 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 BBS10Q8TAM1 723 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 AP2M1Q96CW1 435 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 NRTNQ99748 197 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 HTATIP2Q9BUP3 242 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 MCOLN1Q9GZU1 580 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 QRSL1Q9H0R6 528 aaKnown RBP13.6□□□□□ -0.23
SDC1-201ENST00000254351 C12orf10Q9HB07 376 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 IMP3Q9NV31 184 aaKnown RBP13.6□□□□□ -0.23
SDC1-201ENST00000254351 OR6C2Q9NZP2 312 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 TEX13CA0A0J9YWL9 993 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 FAM183AA6NL82 134 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 PLATP00750 562 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 H1F0P07305 194 aaKnown RBP13.6□□□□□ -0.23
SDC1-201ENST00000254351 FAM157BP0CG42 384 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 CPEP16870 476 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 CD9P21926 228 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 NSG1P42857 185 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 ANXA8L1Q5VT79 327 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 GPR135Q8IZ08 494 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 FTMTQ8N4E7 242 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 L3MBTL4Q8NA19 623 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 ASB11Q8WXH4 323 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 KAT2AQ92830 837 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 OR4K3Q96R72 315 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 MIEF1Q9NQG6 463 aa13.6□□□□□ -0.23
SDC1-201ENST00000254351 A0A1W2PRB8 838 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 TCRBV16S1A1N1A0A5B0 115 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 ZC3H12DA2A288 527 aaKnown RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 CHURC1-FNTBB4DL54 471 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 COCHO43405 550 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 STATHP02808 62 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 MT-ND4P03905 459 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 ADAM15Q13444 863 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 TUSC1Q2TAM9 212 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 ZNF770Q6IQ21 691 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms