RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 FIBINQ8TAL6 211 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 GOLGA5Q8TBA6 731 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SETD6Q8TBK2 473 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SPATA18Q8TC71 538 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 RNASE8Q8TDE3 154 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 TRAF3IP1Q8TDR0 691 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 VN1R17PQ8TDU5 208 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 PCNPQ8WW12 178 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 CKAP2Q8WWK9 683 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SRSF12Q8WXF0 261 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 GGHQ92820 318 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 BCL2L2Q92843 193 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 GLYATL1Q969I3 302 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 FAM162AQ96A26 154 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 EXOC4Q96A65 974 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SLCO4A1Q96BD0 722 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 BIRC7Q96CA5 298 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 FAM122AQ96E09 287 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 RAB3CQ96E17 227 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 MRPL53Q96EL3 112 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 C11orf24Q96F05 449 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 ZBED6CLQ96FA7 236 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 BSCL2Q96G97 398 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 CNDP2Q96KP4 475 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 IMMP1LQ96LU5 166 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 RAB3IPQ96QF0 476 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 PANX3Q96QZ0 392 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TBX15Q96SF7 602 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 KIR2DL4Q99706 377 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 BAG1Q99933 345 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 UBAC1Q9BSL1 405 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 DPH7Q9BTV6 452 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TM2D1Q9BX74 207 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 LRRC2Q9BYS8 371 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ZNF350Q9GZX5 532 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 LSG1Q9H089 658 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 DPEP3Q9H4B8 488 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SRD5A3Q9H8P0 318 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ISG20L2Q9H9L3 353 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 IL1RL2Q9HB29 575 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NTN4Q9HB63 628 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SLC25A19Q9HC21 320 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 MIEF1Q9NQG6 463 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SH3GLB2Q9NR46 395 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CYTL1Q9NRR1 136 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ABCC13Q9NSE7 274 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CUTCQ9NTM9 273 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TMOD3Q9NYL9 352 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 PLEK2Q9NYT0 353 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CNIH4Q9P003 139 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 RSPH14Q9UHP6 348 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NRBP1Q9UHY1 535 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ANAPC5Q9UJX4 755 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ZNF221Q9UK13 617 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CDH7Q9ULB5 785 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CLEC4EQ9ULY5 219 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 MGAT4AQ9UM21 535 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ABCG2Q9UNQ0 655 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NCKAP1Q9Y2A7 1128 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 RNF115Q9Y4L5 304 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 USP16Q9Y5T5 823 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 AUP1Q9Y679 476 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 POMT1Q9Y6A1 747 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ACEP12821 1306 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NPC1L1Q9UHC9 1359 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NACAE9PAV3 2078 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 IGLV8-61A0A075B6I0 122 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MAGEB16A2A368 324 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 C5orf51A6NDU8 294 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SLC15A5A6NIM6 579 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SDR42E2A6NKP2 422 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MEI4A8MW99 385 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 K7ENP7 123 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TNFSF11O14788 317 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TTI1O43156 1089 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SLC7A4O43246 635 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 GPAA1O43292 621 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TIMM44O43615 452 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TRAF3IP2O43734 574 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 LRP3O75074 770 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RTN2O75298 545 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SERF1AO75920 110 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TOXO94900 526 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 HSPA4LO95757 839 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 GH1P01241 217 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 IGLV1-47P01700 117 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RPN1P04843 607 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 FCER2P06734 321 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 LYNP07948 512 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 VIMP08670 466 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 HOXB7P09629 217 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ALPIP09923 528 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 C8orf89P0DMQ9 161 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PSG2P11465 335 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SCG2P13521 617 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PVRP15151 417 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CPN1P15169 458 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PGAM2P15259 253 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 B4GALT1P15291 398 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CYP3A5P20815 502 aa0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms