RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ADCY4Q8NFM4 1077 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 NETO1Q8TDF5 533 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 KAT2AQ92830 837 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 MAL2Q969L2 176 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 MAGED4Q96JG8 741 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 SLC35G5Q96KT7 338 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 OR1F2PQ96R84 312 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 CDC6Q99741 560 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 ASPSCR1Q9BZE9 553 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 PRTFDC1Q9NRG1 225 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 CCM2LQ9NUG4 571 aaPredicted RBP17.28■□□□□ 0.36
CLN3-254ENST00000637050 CLDN16Q9Y5I7 305 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 COL27A1Q8IZC6 1860 aaPredicted RBP17.28■□□□□ 0.36
CLN3-254ENST00000637050 CACNA1HO95180 2353 aa17.28■□□□□ 0.36
CLN3-254ENST00000637050 TGFBR3LH3BV60 316 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 IFI6P09912 130 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 FBLP22087 321 aaKnown RBP17.27■□□□□ 0.36
CLN3-254ENST00000637050 DSTNP60981 165 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 RPS26P62854 115 aaKnown RBP17.27■□□□□ 0.36
CLN3-254ENST00000637050 EEF1A2Q05639 463 aaKnown RBP17.27■□□□□ 0.36
CLN3-254ENST00000637050 SLC13A2Q13183 592 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 ILKQ13418 452 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 CEACAM20Q6UY09 585 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 BMPERQ8N8U9 685 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 OR7G2Q8NG99 324 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 MIPOL1Q8TD10 442 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 ZNF675Q8TD23 568 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 NCLNQ969V3 563 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 FAM162AQ96A26 154 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 IRF2BPLQ9H1B7 796 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 SERHL2Q9H4I8 314 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 LANCL2Q9NS86 450 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 DCAF13Q9NV06 445 aaKnown RBP17.27■□□□□ 0.36
CLN3-254ENST00000637050 PTGFRNQ9P2B2 879 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 ANGPTL2Q9UKU9 493 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 AP4S1Q9Y587 144 aa17.27■□□□□ 0.36
CLN3-254ENST00000637050 MYOCOSA0A1B0GUC4 107 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 AGRPO00253 132 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 UPK1AO00322 258 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 CDC123O75794 336 aaPredicted RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 TIAF1O95411 115 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 ARAFP10398 606 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 FGF5P12034 268 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 IL10P22301 178 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 PSMA4P25789 261 aaKnown RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 CCKBRP32239 447 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 PRIM2P49643 509 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 BTG2P78543 158 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 MRPS35P82673 323 aaKnown RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 IL11RAQ14626 422 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 ZNF630Q2M218 657 aaPredicted RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 FHL5Q5TD97 284 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 PWWP2BQ6NUJ5 590 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 TNFAIP8L2Q6P589 184 aaPredicted RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 RBM44Q6ZP01 1051 aaKnown RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 SZRD1Q7Z422 152 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 PPP1R3BQ86XI6 285 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 TMEM126BQ8IUX1 230 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 OR2L13Q8N349 312 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 NUP43Q8NFH3 380 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 OLAHQ9NV23 265 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 FAM86C1Q9NVL1 165 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 ARMC1Q9NVT9 282 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 THUMPD1Q9NXG2 353 aaKnown RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 A0A087WV62 115 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 EFCAB7A8K855 629 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 HMGN4O00479 90 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 JRKO75564 520 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 SCRG1O75711 98 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 BAG2O95816 211 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 HMGN2P05204 90 aaKnown RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 PRKAG1P54619 331 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 MGAT2Q10469 447 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 PRICKLE4Q2TBC4 344 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 C1orf189Q5VU69 101 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 POP5Q969H6 163 aaKnown RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 CTHRC1Q96CG8 243 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 GIMAP5Q96F15 307 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 ANKRA2Q9H9E1 313 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 APMAPQ9HDC9 416 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 A4GALTQ9NPC4 353 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 DDX18Q9NVP1 670 aaKnown RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 MAT2BQ9NZL9 334 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 STOML1Q9UBI4 398 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 TRPC4Q9UBN4 977 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 ANAPC2Q9UJX6 822 aa17.26■□□□□ 0.35
CLN3-254ENST00000637050 ASCC3Q8N3C0 2202 aaKnown RBP17.26■□□□□ 0.35
CLN3-254ENST00000637050 PLOD3O60568 738 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 BMP10O95393 424 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 HBQ1P09105 142 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 NT5EP21589 574 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 MATN1P21941 496 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 KDELR2P33947 212 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 TXNL4AP83876 142 aaKnown RBP17.25■□□□□ 0.35
CLN3-254ENST00000637050 CDK6Q00534 326 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 E2F1Q01094 437 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 STX4Q12846 297 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 SCARB2Q14108 478 aa17.25■□□□□ 0.35
CLN3-254ENST00000637050 FAM111BQ6SJ93 734 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms