RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ADGRG5Q8IZF4 528 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 LILRA2Q8N149 483 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 FAM162AQ96A26 154 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 SEPHS2Q99611 448 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 MUC13Q9H3R2 512 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 GORASP2Q9H8Y8 452 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 EQTNQ9NQ60 294 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 SEMA3GQ9NS98 782 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 SLC22A11Q9NSA0 550 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 CORO2BQ9UQ03 480 aa18.85■□□□□ 0.61
CLN3-250ENST00000636839 AQP12BA6NM10 295 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 DSCR3O14972 297 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 HMGN2P05204 90 aaKnown RBP18.84■□□□□ 0.61
CLN3-250ENST00000636839 CRYBA2P53672 197 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 POLE2P56282 527 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 LASP1Q14847 261 aaKnown RBP18.84■□□□□ 0.61
CLN3-250ENST00000636839 NKG7Q16617 165 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 AASDHQ4L235 1098 aaPredicted RBP18.84■□□□□ 0.61
CLN3-250ENST00000636839 GCNT6Q5T4J0 391 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 OLIG3Q7RTU3 272 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 ZC3H7AQ8IWR0 971 aaKnown RBP18.84■□□□□ 0.61
CLN3-250ENST00000636839 AQP12AQ8IXF9 295 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 PRSS58Q8IYP2 241 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 NFKBIDQ8NI38 313 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 PRTFDC1Q9NRG1 225 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 LANCL2Q9NS86 450 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 RARRES3Q9UL19 164 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 MUC6Q6W4X9 2439 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 A0A1B0GX78 115 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 DHRS12A0PJE2 317 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 SERPINA1P01009 418 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 FHP07954 510 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 NT5EP21589 574 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 CSTF2P33240 577 aaKnown RBP eCLIP18.84■□□□□ 0.61
CLN3-250ENST00000636839 PRIM2P49643 509 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 SLC34A1Q06495 639 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 ZNF628Q5EBL2 1059 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 TMEM126BQ8IUX1 230 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 SLC44A2Q8IWA5 706 aaPredicted RBP18.84■□□□□ 0.61
CLN3-250ENST00000636839 NUP43Q8NFH3 380 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 TNIP2Q8NFZ5 429 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 TRIM15Q9C019 465 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 RASSF4Q9H2L5 321 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 ZNF304Q9HCX3 659 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 NECTIN3Q9NQS3 549 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 PRDM9Q9NQV7 894 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 AP4S1Q9Y587 144 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 KCNE3Q9Y6H6 103 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 KIF26BQ2KJY2 2108 aa18.84■□□□□ 0.61
CLN3-250ENST00000636839 PRAMEF27A3QJZ7 478 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 HMGN4O00479 90 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 TPST1O60507 370 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 CTNSO60931 367 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 SCRG1O75711 98 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 OR12D1P0DN82 309 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 EEF1A2Q05639 463 aaKnown RBP18.83■□□□□ 0.61
CLN3-250ENST00000636839 VAC14Q08AM6 782 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 MGAT2Q10469 447 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 LRRC23Q53EV4 343 aaPredicted RBP18.83■□□□□ 0.61
CLN3-250ENST00000636839 LAPTM4BQ86VI4 370 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 BMPERQ8N8U9 685 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 PKP2Q99959 881 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 ALOXE3Q9BYJ1 711 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 OR51I1Q9H343 314 aa18.83■□□□□ 0.61
CLN3-250ENST00000636839 COL5A1P20908 1838 aaPredicted RBP18.83■□□□□ 0.61
CLN3-250ENST00000636839 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 PMS2P1A4D2B8 440 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 HRKO00198 91 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 EMC8O43402 210 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 GMNNO75496 209 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 TIPRLO75663 272 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 ATP1B1P05026 303 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 MATN1P21941 496 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 SLC7A1P30825 629 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 ARSFP54793 590 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 DSTNP60981 165 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 STX4Q12846 297 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 FADDQ13158 208 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 DSG2Q14126 1118 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 EXOSC7Q15024 291 aaKnown RBP18.83■□□□□ 0.6
CLN3-250ENST00000636839 MAPK11Q15759 364 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 NIPAL1Q6NVV3 410 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 TMEM64Q6YI46 380 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 SHISA6Q6ZSJ9 500 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 ZNF595Q8IYB9 648 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 GIMAP5Q96F15 307 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 SLC35G5Q96KT7 338 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 ASPSCR1Q9BZE9 553 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 SLC7A5P2Q9GIP4 190 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 AKIRIN1Q9H9L7 192 aaPredicted RBP18.83■□□□□ 0.6
CLN3-250ENST00000636839 CCM2LQ9NUG4 571 aaPredicted RBP18.83■□□□□ 0.6
CLN3-250ENST00000636839 CTSFQ9UBX1 484 aa18.83■□□□□ 0.6
CLN3-250ENST00000636839 PRKD3O94806 890 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 FBLP22087 321 aaKnown RBP18.82■□□□□ 0.6
CLN3-250ENST00000636839 CLPPQ16740 277 aaPredicted RBP18.82■□□□□ 0.6
CLN3-250ENST00000636839 PRICKLE4Q2TBC4 344 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 RPS26P11Q5JNZ5 115 aaPredicted RBP18.82■□□□□ 0.6
CLN3-250ENST00000636839 ARHGAP40Q5TG30 622 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 LCN10Q6JVE6 187 aa18.82■□□□□ 0.6
CLN3-250ENST00000636839 RHBDD2Q6NTF9 364 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms