RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ZNF267Q14586 743 aaPredicted RBP16.84■□□□□ 0.29
CLN3-239ENST00000628023 NADK2Q4G0N4 442 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 IL23RQ5VWK5 629 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 WDR75Q8IWA0 830 aaKnown RBP16.84■□□□□ 0.29
CLN3-239ENST00000628023 APCDD1LQ8NCL9 501 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 OR1N1Q8NGS0 311 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 ELP5Q8TE02 316 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 DOK4Q8TEW6 326 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 CKAP2Q8WWK9 683 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 PSMF1Q92530 271 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 EGLN2Q96KS0 407 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 BRINP2Q9C0B6 783 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 MEAF6Q9HAF1 191 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 SLAMF7Q9NQ25 335 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 SLC35C2Q9NQQ7 365 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.84■□□□□ 0.29
CLN3-239ENST00000628023 NOP53Q9NZM5 478 aaKnown RBP16.84■□□□□ 0.29
CLN3-239ENST00000628023 BAIAP2L1Q9UHR4 511 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 ERVK-19Q9WJR5 959 aa16.84■□□□□ 0.29
CLN3-239ENST00000628023 DDAH2O95865 285 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 DDX5P17844 614 aaKnown RBP16.83■□□□□ 0.28
CLN3-239ENST00000628023 NTSP30990 170 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 GALNSP34059 522 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 SOX11P35716 441 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 EMX2Q04743 252 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 MEP1AQ16819 746 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 SPRED3Q2MJR0 410 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 FHL5Q5TD97 284 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 NXNQ6DKJ4 435 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 HSDL2Q6YN16 418 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 DGAT2L6Q6ZPD8 337 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 FAM47EQ6ZV65 393 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 ZADH2Q8N4Q0 377 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.83■□□□□ 0.28
CLN3-239ENST00000628023 THAP3Q8WTV1 239 aaPredicted RBP16.83■□□□□ 0.28
CLN3-239ENST00000628023 PPCDCQ96CD2 204 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 CNRIP1Q96F85 164 aaPredicted RBP16.83■□□□□ 0.28
CLN3-239ENST00000628023 FBXL20Q96IG2 436 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 ZNF354BQ96LW1 612 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 REEP4Q9H6H4 257 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 SLCO1B3Q9NPD5 702 aa16.83■□□□□ 0.28
CLN3-239ENST00000628023 PPIEQ9UNP9 301 aaKnown RBP16.83■□□□□ 0.28
CLN3-239ENST00000628023 USP9YO00507 2555 aaPredicted RBP16.83■□□□□ 0.28
CLN3-239ENST00000628023 DYTNA2CJ06 578 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 ZFAND5O76080 213 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 AGFG2O95081 481 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 LBPP18428 481 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 ARG2P78540 354 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 PTGR1Q14914 329 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 SMU1Q2TAY7 513 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 ACER2Q5QJU3 275 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 RNF111Q6ZNA4 994 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 R3HCC1LQ7Z5L2 792 aaKnown RBP16.82■□□□□ 0.28
CLN3-239ENST00000628023 ZNF321PQ8N8H1 164 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 SENP5Q96HI0 755 aaPredicted RBP16.82■□□□□ 0.28
CLN3-239ENST00000628023 PSMG3-AS1Q96PY0 264 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 LMF1Q96S06 567 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 CDCP1Q9H5V8 836 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 CXorf21Q9HAI6 301 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 ZBTB20Q9HC78 741 aaPredicted RBP16.82■□□□□ 0.28
CLN3-239ENST00000628023 SH3BP4Q9P0V3 963 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 MAP10Q9P2G4 905 aa16.82■□□□□ 0.28
CLN3-239ENST00000628023 GOLGA8QA0A0J9YX86 632 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 GOLGA8OA6NCC3 632 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 GOLGA8NF8WBI6 632 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 HRKO00198 91 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 SDHDO14521 159 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 FCHO1O14526 889 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 DIAPH2O60879 1101 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 ATP1B1P05026 303 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 GNLYP22749 145 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 EPHA3P29320 983 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 MPIP34949 423 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 PTGER1P34995 402 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 RPL3P39023 403 aaKnown RBP16.81■□□□□ 0.28
CLN3-239ENST00000628023 GPR143P51810 404 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 NCBP2P52298 156 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLN3-239ENST00000628023 INPP5JQ15735 1006 aaPredicted RBP16.81■□□□□ 0.28
CLN3-239ENST00000628023 ANKRD26P1Q6NSI1 321 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 RPS19BP1Q86WX3 136 aaKnown RBP16.81■□□□□ 0.28
CLN3-239ENST00000628023 CCDC116Q8IYX3 515 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 FAM9CQ8IZT9 166 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 VWA5B2Q8N398 1253 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 ZNF721Q8TF20 911 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 ZNF681Q96N22 645 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 MFRPQ9BY79 579 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 WDR55Q9H6Y2 383 aaPredicted RBP16.81■□□□□ 0.28
CLN3-239ENST00000628023 STMN3Q9NZ72 180 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 ZNF223Q9UK11 482 aaPredicted RBP16.81■□□□□ 0.28
CLN3-239ENST00000628023 USH1CQ9Y6N9 552 aa16.81■□□□□ 0.28
CLN3-239ENST00000628023 USP9XQ93008 2570 aaPredicted RBP16.81■□□□□ 0.28
CLN3-239ENST00000628023 CROCCQ5TZA2 2017 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 RELNP78509 3460 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 SPTBN1Q01082 2364 aaKnown RBP16.8■□□□□ 0.28
CLN3-239ENST00000628023 TCP11X1B4DZS4 312 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 SCAMP2O15127 329 aaKnown RBP16.8■□□□□ 0.28
CLN3-239ENST00000628023 PDPK1O15530 556 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 SORBS2O94875 1100 aaKnown RBP16.8■□□□□ 0.28
CLN3-239ENST00000628023 F10P00742 488 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 G6PDP11413 515 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 808.8 ms