RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TRIOBPQ9H2D6 2365 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 ZNF860A6NHJ4 632 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.04□□□□□ -0.8
CUX1-221ENST00000622516 MAN2B1O00754 1011 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 FRS3O43559 492 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 NTN1O95631 604 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 ITGA2P17301 1181 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 TPMTP51580 245 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 PTGES3Q15185 160 aaKnown RBP10.04□□□□□ -0.8
CUX1-221ENST00000622516 PROX2Q3B8N5 592 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 RAB2BQ8WUD1 216 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 ZNF556Q9HAH1 456 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 THSD1Q9NS62 852 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 ASB4Q9Y574 426 aa10.04□□□□□ -0.8
CUX1-221ENST00000622516 TCRBV21S2A2A0A5A6 115 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 GSAPA4D1B5 854 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 PRR19A6NJB7 356 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 PFDN1O60925 122 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 DNAJB5O75953 348 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 CCNB2O95067 398 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 EIF2S1P05198 315 aaKnown RBP10.03□□□□□ -0.8
CUX1-221ENST00000622516 PVRP15151 417 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 POLR2CP19387 275 aaPredicted RBP10.03□□□□□ -0.8
CUX1-221ENST00000622516 ITIH1P19827 911 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 PTNP21246 168 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 CTSKP43235 329 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 NCS1P62166 190 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 CTF1Q16619 201 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 C11orf74Q86VG3 221 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 OR9A2Q8NGT5 310 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 SUN3Q8TAQ9 357 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 NDNFQ8TB73 568 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 ZNF566Q969W8 418 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 SLC35G5Q96KT7 338 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 RIPOR3Q96MK2 946 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 IL4I1Q96RQ9 567 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 COPS4Q9BT78 406 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 GABARAPL3Q9BY60 117 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 ALOXE3Q9BYJ1 711 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 SRMSQ9H3Y6 488 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 MVB12BQ9H7P6 319 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 ACOT13Q9NPJ3 140 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 C11orf16Q9NQ32 467 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 NCKAP1Q9Y2A7 1128 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 HCN4Q9Y3Q4 1203 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 COLEC10Q9Y6Z7 277 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 FANCMQ8IYD8 2048 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 TNRC18O15417 2968 aaPredicted RBP10.03□□□□□ -0.8
CUX1-221ENST00000622516 OR10H3O60404 316 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 CELA2BP08218 269 aaPredicted RBP10.03□□□□□ -0.8
CUX1-221ENST00000622516 JUNDP17535 347 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 RHCEP18577 417 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 GGT2P36268 569 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 MC3RP41968 323 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 RNF144AP50876 292 aaPredicted RBP10.03□□□□□ -0.8
CUX1-221ENST00000622516 CRISP3P54108 245 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 ID2Q02363 134 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 TUBA3CQ13748 450 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 ZIC1Q15915 447 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 DEFB134Q4QY38 66 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 PRRT3Q5FWE3 981 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 OR2L5Q8NG80 312 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 PITX2Q99697 317 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 ROGDIQ9GZN7 287 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 NT5DC2Q9H857 520 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 ZNF226Q9NYT6 803 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 NAALAD2Q9Y3Q0 740 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 WDFY3Q8IZQ1 3526 aa10.03□□□□□ -0.8
CUX1-221ENST00000622516 ZW10O43264 779 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 STSP08842 583 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 ZNF888P0CJ79 500 aaPredicted RBP10.02□□□□□ -0.8
CUX1-221ENST00000622516 ANXA8P13928 327 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 CMPK1P30085 196 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 BUD31P41223 144 aaPredicted RBP10.02□□□□□ -0.8
CUX1-221ENST00000622516 FRKP42685 505 aaPredicted RBP10.02□□□□□ -0.8
CUX1-221ENST00000622516 BMXP51813 675 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 HOXC5Q00444 222 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 ADPRMQ3LIE5 342 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 KLHL35Q6PF15 583 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 VN1R4Q7Z5H5 301 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 BCDIN3DQ7Z5W3 292 aaKnown RBP10.02□□□□□ -0.8
CUX1-221ENST00000622516 A4GALTQ9NPC4 353 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 SEMA3GQ9NS98 782 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 RHBDL2Q9NX52 303 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 IMPAD1Q9NX62 359 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 CD207Q9UJ71 328 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 CORINQ9Y5Q5 1042 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 SLCO1B1Q9Y6L6 691 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 AP1M2Q9Y6Q5 423 aa10.02□□□□□ -0.8
CUX1-221ENST00000622516 CTSVO60911 334 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 CHRM4P08173 479 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 CHMP24386 653 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 TEAD1P28347 426 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 NTSP30990 170 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 KCNC4Q03721 635 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 RAB30Q15771 203 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 GPAT3Q53EU6 434 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 ZNF605Q86T29 641 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 APOBEC4Q8WW27 367 aaKnown RBP10.02□□□□□ -0.81
CUX1-221ENST00000622516 GGHQ92820 318 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms