RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MEP1AQ16819 746 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 TRMT12Q53H54 448 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 TUBA3EQ6PEY2 450 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 HSDL2Q6YN16 418 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 LIX1Q8N485 282 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 SLC5A8Q8N695 610 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 CTHRC1Q96CG8 243 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 HES7Q9BYE0 225 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 EPN3Q9H201 632 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 EPS8L2Q9H6S3 715 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 WDR55Q9H6Y2 383 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 MEAF6Q9HAF1 191 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 TAS2R7Q9NYW3 318 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 EHD3Q9NZN3 535 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 PSME2Q9UL46 239 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 TMED5Q9Y3A6 229 aa13.19□□□□□ -0.3
SHKBP1-217ENST00000598558 DOCK10Q96BY6 2186 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 GABRR3A8MPY1 467 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 MYO1GB0I1T2 1018 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 WWP2O00308 870 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 SNUPNO95149 360 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 NADKO95544 446 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 CBX7O95931 251 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 COX7A2P14406 83 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 PCSK2P16519 638 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 GSTM5P46439 218 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 TNFSF10P50591 281 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 DIO3P55073 304 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 MLLT10P55197 1068 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 MRPS35P82673 323 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 EMX2Q04743 252 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 PDE7AQ13946 482 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 PTGR1Q14914 329 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 EXOSC7Q15024 291 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 ATP6AP1LQ52LC2 224 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 SPINK14Q6IE38 97 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 LARP4Q71RC2 724 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 HPS6Q86YV9 775 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 TRIM42Q8IWZ5 723 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 GALNT12Q8IXK2 581 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 LRRC25Q8N386 305 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 KRTCAP2Q8N6L1 136 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 FNDC5Q8NAU1 212 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 OR9A2Q8NGT5 310 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 CKAP2Q8WWK9 683 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 KAT2AQ92830 837 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 PNPLA2Q96AD5 504 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 PELOQ9BRX2 385 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 RNF32Q9H0A6 362 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 GLIPR2Q9H4G4 154 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 INTS9Q9NV88 658 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 MYOTQ9UBF9 498 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 ANAPC2Q9UJX6 822 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 B3GNT3Q9Y2A9 372 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 DTX4Q9Y2E6 619 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 NTNG1Q9Y2I2 539 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 WBP11Q9Y2W2 641 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF780BQ9Y6R6 833 aa13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 SPENQ96T58 3664 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-217ENST00000598558 GOLGA8QA0A0J9YX86 632 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 GOLGA8OA6NCC3 632 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 OR5H15A6NDH6 313 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 GOLGA8NF8WBI6 632 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 PYCARD-AS1I3L0S3 204 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 ITGA10O75578 1167 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 OR2J2O76002 312 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 NEURL1O76050 574 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 WISP2O76076 250 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 G6PDP11413 515 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 EFNA1P20827 205 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 EPHA3P29320 983 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 CASRP41180 1078 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 ARG2P78540 354 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 SRSF11Q05519 484 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 C19orf57Q0VDD7 668 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 EBPQ15125 230 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 SLC9B1Q4ZJI4 515 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF628Q5EBL2 1059 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 FHL5Q5TD97 284 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 LYPD8Q6UX82 237 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 IKBIPQ70UQ0 350 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 RIMKLAQ8IXN7 391 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 LGI4Q8N135 537 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF441Q8N8Z8 693 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 MDS2Q8NDY4 140 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 C7orf57Q8NEG2 295 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 OR7A2PQ8NGA2 310 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 OR8K3Q8NH51 312 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 CIDECQ96AQ7 238 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 RASL10BQ96S79 203 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 BRINP2Q9C0B6 783 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 REEP4Q9H6H4 257 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 TEKT2Q9UIF3 430 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 PCDHGA10Q9Y5H3 936 aa13.17□□□□□ -0.3
SHKBP1-217ENST00000598558 HDAC3O15379 428 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 TBX19O60806 448 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 OR6B1O95007 311 aa13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 ALDOCP09972 364 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 TRHRP34981 398 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-217ENST00000598558 ZNF169Q14929 603 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms