RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 NEDD8-MDP1E9PL57 170 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 PDHXO00330 501 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 CFLARO15519 480 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 SNAP91O60641 907 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 OR6B1O95007 311 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 GSTA1P08263 222 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 GP9P14770 177 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 GNSP15586 552 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 CCNA2P20248 432 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 PTMSP20962 102 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 TMOD1P28289 359 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 CCND2P30279 289 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 SLC6A8P48029 635 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 BPIFB3P59826 476 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 MYBPC1Q00872 1141 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 KLF5Q13887 457 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 INAQ16352 499 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 CMPK2Q5EBM0 449 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 DCAF12Q5T6F0 453 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 C12orf60Q5U649 245 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 AGAP7PQ5VUJ5 663 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 OR6B2Q6IFH4 312 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 BNIPLQ7Z465 357 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 VPS36Q86VN1 386 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 RANBP3LQ86VV4 465 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 KCNMB4Q86W47 210 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 LMNTD2Q8IXW0 634 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 RNF148Q8N7C7 305 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 OR56B1Q8NGI3 324 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 OR1K1Q8NGR3 316 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 TMEM37Q8WXS4 190 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 TMEM45BQ96B21 275 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 C16orf58Q96GQ5 468 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 CAPNS2Q96L46 248 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 SAMD8Q96LT4 415 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 TMEM231Q9H6L2 316 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 IL1RAPQ9NPH3 570 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 FAM212BQ9NTI7 297 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 HPF1Q9NWY4 346 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 GTSE1Q9NYZ3 720 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 ACTR3BQ9P1U1 418 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 MUTYHQ9UIF7 546 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 RARRES3Q9UL19 164 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 MGAT4AQ9UM21 535 aa3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 NIP7Q9Y221 180 aaKnown RBP eCLIP3.07□□□□□ -1.92
SMCHD1-209ENST00000583441 IGHV3OR16-10A0A075B7F0 116 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 TRGV8A0A0C4DH27 118 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 A0A0U1RRA0 63 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 SH3PXD2BA1X283 911 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 TMEM89A2RUT3 159 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 IGLON5A6NGN9 336 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 RNF212BA8MTL3 300 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 ZNF724A8MTY0 619 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 SH2D1BO14796 132 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 ZNF749O43361 778 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 TXNL1O43396 289 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 B3GALNT1O75752 331 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 TGFAP01135 160 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 IGHG1P01857 330 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 PROS1P07225 676 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 SELEP16581 610 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 CALML3P27482 149 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 MTIF2P46199 727 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 RABIFP47224 123 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 AFF2P51816 1311 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 ZNF131P52739 623 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 NLRP11P59045 1033 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 RPS27AP62979 156 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 GSTO1P78417 241 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 PDIA5Q14554 519 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 POM121L1PQ3SYA9 428 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 LIPJQ5W064 366 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 NUFIP2Q7Z417 695 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 LINC00518Q8N0U6 118 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 FAM71CQ8NEG0 241 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 OR1B1Q8NGR6 318 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 PHYHIPQ92561 330 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 P3H4Q92791 437 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 RCHY1Q96PM5 261 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 ACCSQ96QU6 501 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 RBM4BQ9BQ04 359 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 JPH2Q9BR39 696 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 WRAP53Q9BUR4 548 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 LRRC61Q9BV99 259 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 RAB17Q9H0T7 212 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 CXXC4Q9H2H0 198 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 TUBB1Q9H4B7 451 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 DCTPP1Q9H773 170 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 SLC25A19Q9HC21 320 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 SLC7A10Q9NS82 523 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 EIF3KQ9UBQ5 218 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 LHX3Q9UBR4 397 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 SLC6A5Q9Y345 797 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 PRSS21Q9Y6M0 314 aa3.06□□□□□ -1.92
SMCHD1-209ENST00000583441 NPC1L1Q9UHC9 1359 aa3.05□□□□□ -1.92
SMCHD1-209ENST00000583441 NPIPA5A0A0B4J1W7 369 aa3.05□□□□□ -1.92
SMCHD1-209ENST00000583441 TRBV5-4A0A0C4DH59 114 aa3.05□□□□□ -1.92
SMCHD1-209ENST00000583441 A8MXK9 166 aa3.05□□□□□ -1.92
SMCHD1-209ENST00000583441 NPIPA5E9PKD4 350 aa3.05□□□□□ -1.92
SMCHD1-209ENST00000583441 DUSP11O75319 330 aaKnown RBP3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms