RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PTPRJQ12913 1337 aa3.64□□□□□ -1.83
SMCHD1-208ENST00000583344 TMEM150BA6NC51 233 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 SLC15A5A6NIM6 579 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 A6NL46 340 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 C19orf81C9J6K1 198 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 GOLGA8SH3BPF8 625 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 GOLGA8MH3BSY2 632 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 GOLGA8RI6L899 631 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 MCF2LO15068 1137 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 SLC22A2O15244 555 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 OGTO15294 1046 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 BANF1O75531 89 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 WISP2O76076 250 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 SORBS2O94875 1100 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 GOSR1O95249 250 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 KCNK5O95279 499 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 TFAP2AP05549 437 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ABCB1P08183 1280 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 UBTFL6P0CB48 400 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ZCCHC18P0CG32 403 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CCDC166P0CW27 439 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 THRAP10827 490 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 AZU1P20160 251 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 TPSB2P20231 275 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 UGT1A1P22309 533 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CPT2P23786 658 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 IL4RP24394 825 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 DNAJB1P25685 340 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 PSMA2P25787 234 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CCND2P30279 289 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 MIPP30301 263 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 TLX1P31314 330 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 GP5P40197 560 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 SLC1A6P48664 564 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 NR2C2P49116 596 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ACOT2P49753 483 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 AQP5P55064 265 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 MFAP4P55083 255 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 MTTPP55157 894 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 MLLT10P55197 1068 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 RPS6P62753 249 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 FOLH1Q04609 750 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 PDK3Q15120 406 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 TPSAB1Q15661 275 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CHI3L2Q15782 390 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ZNF674Q2M3X9 581 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ANKRD20A4Q4UJ75 823 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 SFT2D3Q587I9 215 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 FFAR4Q5NUL3 377 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 STEAP4Q687X5 459 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 DHDDSQ86SQ9 333 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 LCA5Q86VQ0 697 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ARID3BQ8IVW6 561 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CPSF7Q8N684 471 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 TDRD5Q8NAT2 981 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CATSPER1Q8NEC5 780 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 OR5B17Q8NGF7 314 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 OR14L1PQ8NHC6 308 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 JOSD2Q8TAC2 188 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 SPATA18Q8TC71 538 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 TRPC4APQ8TEL6 797 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 HAUS1Q96CS2 278 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 FAF2Q96CS3 445 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 RRNAD1Q96FB5 475 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 DUS3LQ96G46 650 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ZBED3Q96IU2 234 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 POM121L2Q96KW2 1035 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 PRICKLE1Q96MT3 831 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 MCEEQ96PE7 176 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 KCNK16Q96T55 309 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 KLF6Q99612 283 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 EBNA1BP2Q99848 306 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 DDX50Q9BQ39 737 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CNPY3Q9BT09 278 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 NAT9Q9BTE0 207 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 THUMPD3Q9BV44 507 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 DNAI2Q9GZS0 605 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 IQCGQ9H095 443 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 SDCBP2Q9H190 292 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 OPA3Q9H6K4 179 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 POLR1BQ9H9Y6 1135 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 SCPEP1Q9HB40 452 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CYP3A43Q9HB55 503 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 POPDC2Q9HBU9 364 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CISHQ9NSE2 258 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 NRBP2Q9NSY0 501 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ETNK2Q9NVF9 386 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 RBAKQ9NYW8 714 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 PTTG2Q9NZH5 202 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 TMOD2Q9NZR1 351 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 HACD3Q9P035 362 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 ARMCX1Q9P291 453 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 BCAP29Q9UHQ4 241 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CPSF3Q9UKF6 684 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 TMCC3Q9ULS5 477 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 PRPF19Q9UMS4 504 aaKnown RBP3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 PSMD13Q9UNM6 376 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 AGTPBP1Q9UPW5 1226 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 CHMP2BQ9UQN3 213 aa3.63□□□□□ -1.83
SMCHD1-208ENST00000583344 POMPQ9Y244 141 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms