RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SLC35E2P0CK97 266 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 GCAP28676 217 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 SSTR4P31391 388 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 NUP107P57740 925 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 TFF3Q07654 80 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 TBL3Q12788 808 aaKnown RBP18.86■□□□□ 0.61
SHMT1-209ENST00000582653 IFT88Q13099 833 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 PRAMEF20Q5VT98 475 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 ADGRD1Q6QNK2 874 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 SLC29A4Q7RTT9 530 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 OR5M9Q8NGP3 310 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 OR5M3Q8NGP4 307 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 ZNF483Q8TF39 744 aaPredicted RBP18.86■□□□□ 0.61
SHMT1-209ENST00000582653 SMC6Q96SB8 1091 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 WWTR1Q9GZV5 400 aa18.86■□□□□ 0.61
SHMT1-209ENST00000582653 EXOC1LA0A1B0GW35 172 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 FOXO6A8MYZ6 492 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 AQP7O14520 342 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 LRATO95237 230 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 PDYNP01213 254 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 CT62P0C5K7 136 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 ACVR2AP27037 513 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 PIK3R1P27986 724 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 EBPQ15125 230 aaKnown RBP18.85■□□□□ 0.61
SHMT1-209ENST00000582653 CCNYL2Q5T2Q4 361 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 OR52E8Q6IFG1 317 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 LETMD1Q6P1Q0 360 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 ZNF585AQ6P3V2 769 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 TMEM64Q6YI46 380 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 CCDC71Q8IV32 467 aaPredicted RBP18.85■□□□□ 0.61
SHMT1-209ENST00000582653 FAM13CQ8NE31 585 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 PAQR8Q8TEZ7 354 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 SPACA9Q96E40 222 aaPredicted RBP18.85■□□□□ 0.61
SHMT1-209ENST00000582653 TTYH2Q9BSA4 534 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 ELOVL6Q9H5J4 265 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 AHSPQ9NZD4 102 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 TMEM216Q9P0N5 145 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 ITGB1BP2Q9UKP3 347 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 SLC12A4Q9UP95 1085 aa18.85■□□□□ 0.61
SHMT1-209ENST00000582653 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.85■□□□□ 0.61
SHMT1-209ENST00000582653 NKX2-6A6NCS4 301 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 FIGNL2A6NMB9 653 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 FBXO45P0C2W1 286 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 RFPL3SP0C7P2 107 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 GALNSP34059 522 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 GGTA1PQ4G0N0 100 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 DND1Q8IYX4 353 aaKnown RBP18.84■□□□□ 0.61
SHMT1-209ENST00000582653 MMP21Q8N119 569 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 METTL4Q8N3J2 472 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 OR10G3Q8NGC4 313 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 OR4K14Q8NGD5 310 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 TRPC4APQ8TEL6 797 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 SARAFQ96BY9 339 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 HBEGFQ99075 208 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 LDAHQ9H6V9 325 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 CXorf21Q9HAI6 301 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 PROK2Q9HC23 129 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 NPDC1Q9NQX5 325 aaPredicted RBP18.84■□□□□ 0.61
SHMT1-209ENST00000582653 CNIH4Q9P003 139 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 ZNF225Q9UK10 706 aa18.84■□□□□ 0.61
SHMT1-209ENST00000582653 C2orf92A0A1B0GVN3 265 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 OR6C76A6NM76 312 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 HCN1O60741 890 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 OR4F21O95013 312 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 OTCP00480 354 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 HOXD4P09016 255 aaPredicted RBP18.83■□□□□ 0.6
SHMT1-209ENST00000582653 MSX1P28360 303 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 SERPINB3P29508 390 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 HSD17B3P37058 310 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 MAN2A2P49641 1150 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 XKP51811 444 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 KCNJ2P63252 427 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 LGSNQ5TDP6 509 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 B3GNT6Q6ZMB0 384 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 PAGE2Q7Z2X7 111 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 COMMD6Q7Z4G1 85 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 DMRTC2Q8IXT2 367 aaPredicted RBP18.83■□□□□ 0.6
SHMT1-209ENST00000582653 OR10Q1Q8NGQ4 319 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 SELENOMQ8WWX9 145 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 C1QTNF3Q9BXJ4 246 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 ACAD8Q9UKU7 415 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 CHCHD2Q9Y6H1 151 aaPredicted RBP18.83■□□□□ 0.6
SHMT1-209ENST00000582653 ZNF407Q9C0G0 2248 aa18.83■□□□□ 0.6
SHMT1-209ENST00000582653 FAM90A27PA6NNH2 459 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 RIPK2O43353 540 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 WDR1O75083 606 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 FAM153BP0C7A2 387 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 GLI4P10075 376 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 MAPK12P53778 367 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 CLCQ05315 142 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 GALNT1Q10472 559 aaPredicted RBP18.82■□□□□ 0.6
SHMT1-209ENST00000582653 FAM153CQ494X1 144 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 TCHHL1Q5QJ38 904 aaPredicted RBP18.82■□□□□ 0.6
SHMT1-209ENST00000582653 WLSQ5T9L3 541 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 RTL6Q6ICC9 239 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 TIFABQ6ZNK6 161 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 GALNT12Q8IXK2 581 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 KIF18AQ8NI77 898 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 JSRP1Q96MG2 331 aaPredicted RBP18.82■□□□□ 0.6
SHMT1-209ENST00000582653 ZFP64Q9NPA5 681 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms