RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 GDF2Q9UK05 429 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 ZNF223Q9UK11 482 aaPredicted RBP7.52□□□□□ -1.21
VPS53-214ENST00000572607 PSME2Q9UL46 239 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 ERVK-19Q9WJR5 959 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 CELSR1Q9NYQ6 3014 aa7.52□□□□□ -1.21
VPS53-214ENST00000572607 PDZD2O15018 2839 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 APCP25054 2843 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 GNG14A0A1W2PPG7 69 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 GOLGA6L10A6NI86 522 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 OR6C76A6NM76 312 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 SHISA8B8ZZ34 492 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 NPIPA5E9PKD4 350 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 G3V2L1 256 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 PPP6CO00743 305 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 TFECO14948 347 aaPredicted RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 LRRTM2O43300 516 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ZNF500O60304 480 aaPredicted RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 PLIN3O60664 434 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 NUDT17P0C025 328 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 CPA3P15088 417 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 POU3F2P20265 443 aaPredicted RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 NT5EP21589 574 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 MST1P26927 711 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 GALNSP34059 522 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ALDH9A1P49189 494 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 MEOX1P50221 254 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 HK2P52789 917 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 KCNK10P57789 538 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 TRA2BP62995 288 aaKnown RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 PLGLB1Q02325 96 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ACSM2AQ08AH3 577 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ZNF267Q14586 743 aaPredicted RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 MPEG1Q2M385 716 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 SPIN4Q56A73 249 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 C1QL3Q5VWW1 255 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 HLA-DQA1Q5Y7H0 255 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ACSM2BQ68CK6 577 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 WDR93Q6P2C0 686 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 MTFR2Q6P444 385 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 IL20RBQ6UXL0 311 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 C1orf229Q6ZS94 237 aaPredicted RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 HOMEZQ8IX15 550 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 C4orf33Q8N1A6 199 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 GHDCQ8N2G8 530 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 CPSF7Q8N684 471 aaKnown RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 C1orf52Q8N6N3 182 aaKnown RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 NUBPLQ8TB37 319 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ZNF721Q8TF20 911 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 SREK1Q8WXA9 508 aaKnown RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 SGCZQ96LD1 299 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 GPR137Q96N19 417 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 FRMD6Q96NE9 622 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 RASL10BQ96S79 203 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 HBEGFQ99075 208 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 GSTO2Q9H4Y5 243 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 LIN28AQ9H9Z2 209 aaKnown RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 PFDN4Q9NQP4 134 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 FARSBQ9NSD9 589 aaKnown RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 GIMAP4Q9NUV9 329 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 TEX10Q9NXF1 929 aaPredicted RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 MCM8Q9UJA3 840 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ERRFI1Q9UJM3 462 aaPredicted RBP7.51□□□□□ -1.21
VPS53-214ENST00000572607 NPIPA1Q9UND3 350 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ZNF780BQ9Y6R6 833 aa7.51□□□□□ -1.21
VPS53-214ENST00000572607 ADGRG4Q8IZF6 3080 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 A0A1B0GTL3 188 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 A1L4Q6 167 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 CAPN14A8MX76 684 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 PGRMC2O15173 223 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 PEX1O43933 1283 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 PCDH7O60245 1069 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 PRKNO60260 465 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 ERAL1O75616 437 aaKnown RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 OR6B1O95007 311 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 CHEK2O96017 543 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 P04436 131 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 STSP08842 583 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 ESRRAP11474 423 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 CPMP14384 443 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 PORP16435 677 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 ABOP16442 354 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 CSNK2A2P19784 350 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 COL8A1P27658 744 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 SOX3P41225 446 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 GSTM5P46439 218 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 XKP51811 444 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 NAGLUP54802 743 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 DNAJB13P59910 316 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 GPR85P60893 370 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 TBL3Q12788 808 aaKnown RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 HEPACAMQ14CZ8 416 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 SPDYAQ5MJ70 313 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 TCHHL1Q5QJ38 904 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 XP32Q5T750 250 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 LIPMQ5VYY2 423 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 SLC48A1Q6P1K1 146 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 PAOXQ6QHF9 649 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 BNC2Q6ZN30 1099 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 C16orf47Q6ZP98 133 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 GK5Q6ZS86 529 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms