RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SPRR3Q9UBC9 169 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 Q9UFV3 132 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 CCDC168Q8NDH2 2452 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 C2orf92A0A1B0GVN3 265 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 A0A1W2PS29 197 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 LRRC3CA6NJW4 275 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 SEMA3DO95025 777 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 RBP1P09455 135 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 GABRA1P14867 456 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 SSTR4P31391 388 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 ARL1P40616 181 aaPredicted RBP14.78□□□□□ -0.04
CLN3-229ENST00000567963 CCNG1P51959 295 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 CKAP4Q07065 602 aaKnown RBP14.78□□□□□ -0.04
CLN3-229ENST00000567963 TESK1Q15569 626 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 OR52E8Q6IFG1 317 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 TAGAPQ8N103 731 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 ZNF441Q8N8Z8 693 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 ISL2Q96A47 359 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 TP53INP1Q96A56 240 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 CXorf21Q9HAI6 301 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 ZBTB26Q9HCK0 441 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 TEX10Q9NXF1 929 aaPredicted RBP14.78□□□□□ -0.04
CLN3-229ENST00000567963 QPCTLQ9NXS2 382 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 CNOT11Q9UKZ1 510 aaKnown RBP14.78□□□□□ -0.04
CLN3-229ENST00000567963 PCDHGB3Q9Y5G1 929 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 F8P00451 2351 aa14.78□□□□□ -0.04
CLN3-229ENST00000567963 ANKRD33BA6NCL7 494 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 STX16-NPEPL1H3BU86 382 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 STX16O14662 325 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 PIK3R1P27986 724 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 ADH7P40394 386 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 MAGEA12P43365 314 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 FUT7Q11130 342 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 C1orf185Q5T7R7 199 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 FRG2Q64ET8 278 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 LIX1LQ8IVB5 337 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 CLYBLQ8N0X4 340 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 NEIL3Q8TAT5 605 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 SLC44A1Q8WWI5 657 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 JSRP1Q96MG2 331 aaPredicted RBP14.77□□□□□ -0.04
CLN3-229ENST00000567963 FRG2BQ96QU4 278 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 DOHHQ9BU89 302 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 KCNN3Q9UGI6 736 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 PCTPQ9UKL6 214 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 TMCO1Q9UM00 188 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 ANKRD17O75179 2603 aaKnown RBP14.77□□□□□ -0.04
CLN3-229ENST00000567963 HIVEP1P15822 2718 aa14.77□□□□□ -0.04
CLN3-229ENST00000567963 FREM3P0C091 2139 aa14.77□□□□□ -0.05
CLN3-229ENST00000567963 ARHGAP21Q5T5U3 1957 aa14.77□□□□□ -0.05
CLN3-229ENST00000567963 TRIM3O75382 744 aaPredicted RBP14.76□□□□□ -0.05
CLN3-229ENST00000567963 LRATO95237 230 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 KLK1P06870 262 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 CT62P0C5K7 136 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 TRAF3Q13114 568 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 TBCELQ5QJ74 424 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 C10orf62Q5T681 223 aaPredicted RBP14.76□□□□□ -0.05
CLN3-229ENST00000567963 TTC19Q6DKK2 380 aaPredicted RBP14.76□□□□□ -0.05
CLN3-229ENST00000567963 TMEM64Q6YI46 380 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 GALNT12Q8IXK2 581 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 ZNF615Q8N8J6 731 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 OR4K14Q8NGD5 310 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 DIO2Q92813 273 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 NSUN5Q96P11 429 aaKnown RBP14.76□□□□□ -0.05
CLN3-229ENST00000567963 ZNF559Q9BR84 538 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 MRPL1Q9BYD6 325 aaKnown RBP14.76□□□□□ -0.05
CLN3-229ENST00000567963 OR10A5Q9H207 317 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 CDC42EP4Q9H3Q1 356 aaKnown RBP14.76□□□□□ -0.05
CLN3-229ENST00000567963 SLC24A3Q9HC58 644 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 AHSPQ9NZD4 102 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 B4GALT7Q9UBV7 327 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 MTRF1LQ9UGC7 380 aaKnown RBP14.76□□□□□ -0.05
CLN3-229ENST00000567963 ADAM29Q9UKF5 820 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 NPFFR2Q9Y5X5 522 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 CAPN14A8MX76 684 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 FAM47E-STBD1D6RA91 191 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 TP53I11O14683 189 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 ACSL3O95573 720 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 INHBAP08476 426 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 COL6A2P12110 1019 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 XKP51811 444 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 FBXW4P57775 412 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 RPS6KA2Q15349 733 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 CES4AQ5XG92 561 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 HLA-DQA1Q5Y7H0 255 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 TMEM198Q66K66 360 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 SPNS3Q6ZMD2 512 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 PAGE2Q7Z2X7 111 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 MILR1Q7Z6M3 343 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 TRPC4APQ8TEL6 797 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 ADIPOR1Q96A54 375 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 SLC6A15Q9H2J7 730 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 XPR1Q9UBH6 696 aa14.76□□□□□ -0.05
CLN3-229ENST00000567963 SMIM24O75264 130 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 GDF1P27539 372 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 TRPC1P48995 793 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 SERPINB9P50453 376 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 IFT88Q13099 833 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 DUSP8Q13202 625 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 TSNAXIP1Q2TAA8 658 aa14.75□□□□□ -0.05
CLN3-229ENST00000567963 SLC25A35Q3KQZ1 300 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms