RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 PDE9AO76083 593 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 NADKO95544 446 aaPredicted RBP14.47□□□□□ -0.09
VPS39-203ENST00000561797 P04436 131 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 CCL3P10147 92 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 ESRRAP11474 423 aaPredicted RBP14.47□□□□□ -0.09
VPS39-203ENST00000561797 CPA3P15088 417 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 PORP16435 677 aaPredicted RBP14.47□□□□□ -0.09
VPS39-203ENST00000561797 FEN1P39748 380 aaKnown RBP14.47□□□□□ -0.09
VPS39-203ENST00000561797 FOXA1P55317 472 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 CFAP157Q5JU67 520 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 C6orf163Q5TEZ5 329 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 FAM180BQ6P0A1 224 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 SLC48A1Q6P1K1 146 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 FAM47EQ6ZV65 393 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 GALNT12Q8IXK2 581 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 GBP7Q8N8V2 638 aaPredicted RBP14.47□□□□□ -0.09
VPS39-203ENST00000561797 GOLM1Q8NBJ4 401 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 KLHL29Q96CT2 875 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 APIPQ96GX9 242 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 CCDC120Q96HB5 630 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 SGCZQ96LD1 299 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 FAIM2Q9BWQ8 316 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 SHCBP1LQ9BZQ2 653 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 WWTR1Q9GZV5 400 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 SACM1LQ9NTJ5 587 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 CES1P1Q9UKY3 287 aa14.47□□□□□ -0.09
VPS39-203ENST00000561797 A0A1B0GTH9 108 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 C2orf92A0A1B0GVN3 265 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 GNG14A0A1W2PPG7 69 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 GOLGA6L10A6NI86 522 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 OR6C76A6NM76 312 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 PCDH7O60245 1069 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 CRCPO75575 148 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 SLU7O95391 586 aaKnown RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 SERPINB3P29508 390 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 PIGAP37287 484 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 DNASE1L1P49184 302 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 NR0B1P51843 470 aaKnown RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 PPIAP62937 165 aaKnown RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 TRA2BP62995 288 aaKnown RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 RAE1P78406 368 aaKnown RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 SLC18A2Q05940 514 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 ACSM2AQ08AH3 577 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 EBPQ15125 230 aaKnown RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 ZNF791Q3KP31 576 aaPredicted RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 CMPK2Q5EBM0 449 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 SPDYAQ5MJ70 313 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 HLA-DQA1Q5Y7H0 255 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 ACSM2BQ68CK6 577 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 FAM111BQ6SJ93 734 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 LYPD8Q6UX82 237 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 Q6ZPB1 254 aaPredicted RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 FRMD7Q6ZUT3 714 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 CHERPQ8IWX8 916 aaKnown RBP14.46□□□□□ -0.09
VPS39-203ENST00000561797 SLC15A4Q8N697 577 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 FAM13CQ8NE31 585 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 RDH11Q8TC12 318 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 FAM173AQ9BQD7 235 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 BRINP2Q9C0B6 783 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 OR10A5Q9H207 317 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 OXSMQ9NWU1 459 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 HEY2Q9UBP5 337 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 MCM8Q9UJA3 840 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 PSME2Q9UL46 239 aa14.46□□□□□ -0.09
VPS39-203ENST00000561797 PHF3Q92576 2039 aaKnown RBP14.46□□□□□ -0.1
VPS39-203ENST00000561797 DOPEY1Q5JWR5 2465 aa14.46□□□□□ -0.1
VPS39-203ENST00000561797 IL3P08700 152 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 CSNK2A2P19784 350 aaPredicted RBP14.45□□□□□ -0.1
VPS39-203ENST00000561797 DNAJB13P59910 316 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 DUSP2Q05923 314 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 IFFO1Q0D2I5 559 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 FUT7Q11130 342 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 SPIN4Q56A73 249 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 SLC22A10Q63ZE4 541 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 ZNF787Q6DD87 383 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 TMEM64Q6YI46 380 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 C3P1Q6ZMU1 363 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 BNC2Q6ZN30 1099 aaPredicted RBP14.45□□□□□ -0.1
VPS39-203ENST00000561797 GK5Q6ZS86 529 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 FGD2Q7Z6J4 655 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 ZNF615Q8N8J6 731 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 ADCY4Q8NFM4 1077 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 OR5M3Q8NGP4 307 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 ITLN2Q8WWU7 325 aaPredicted RBP14.45□□□□□ -0.1
VPS39-203ENST00000561797 SPACA9Q96E40 222 aaPredicted RBP14.45□□□□□ -0.1
VPS39-203ENST00000561797 EBPLQ9BY08 206 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 TTTY12Q9BZ98 90 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 PFDN4Q9NQP4 134 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 TUBA8Q9NY65 449 aaPredicted RBP14.45□□□□□ -0.1
VPS39-203ENST00000561797 BCAP29Q9UHQ4 241 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 DLGAP4Q9Y2H0 992 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 ZNF780BQ9Y6R6 833 aa14.45□□□□□ -0.1
VPS39-203ENST00000561797 ACOT7O00154 380 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 PRRG2O14669 202 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 ZNF500O60304 480 aaPredicted RBP14.44□□□□□ -0.1
VPS39-203ENST00000561797 LRATO95237 230 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 TPOP07202 933 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 PTGS2P35354 604 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 NAA20P61599 178 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 EXOSC7Q15024 291 aaKnown RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms