RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ALDH18A1P54886 795 aaKnown RBP10.69□□□□□ -0.7
USP3-220ENST00000561381 WNT3P56703 355 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 SLC7A5Q01650 507 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 CAV1Q03135 178 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 MYBPHQ13203 477 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 NAB1Q13506 487 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 GTF2H2Q13888 395 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 PCBP2Q15366 365 aaKnown RBP eCLIP10.69□□□□□ -0.7
USP3-220ENST00000561381 UAP1Q16222 522 aaPredicted RBP10.69□□□□□ -0.7
USP3-220ENST00000561381 FAM83EQ2M2I3 478 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 SPRED3Q2MJR0 410 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 FAM219BQ5XKK7 198 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 BICRALQ6AI39 1079 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 GTF2H2CQ6P1K8 395 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 BRICD5Q6PL45 260 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 SLC29A4Q7RTT9 530 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 PLD6Q8N2A8 252 aaKnown RBP10.69□□□□□ -0.7
USP3-220ENST00000561381 LRRC25Q8N386 305 aaPredicted RBP10.69□□□□□ -0.7
USP3-220ENST00000561381 FBXW8Q8N3Y1 598 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 SLC15A4Q8N697 577 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 ZNF441Q8N8Z8 693 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 C7orf57Q8NEG2 295 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 WDR20Q8TBZ3 569 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 DOHHQ9BU89 302 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 RAB17Q9H0T7 212 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 IPPKQ9H8X2 491 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 ZNF358Q9NW07 568 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 LYARQ9NX58 379 aaKnown RBP10.69□□□□□ -0.7
USP3-220ENST00000561381 CPSF2Q9P2I0 782 aaKnown RBP10.69□□□□□ -0.7
USP3-220ENST00000561381 KCNN3Q9UGI6 736 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 BOKQ9UMX3 212 aaPredicted RBP10.69□□□□□ -0.7
USP3-220ENST00000561381 L3MBTL1Q9Y468 752 aa10.69□□□□□ -0.7
USP3-220ENST00000561381 ARHGAP21Q5T5U3 1957 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 OR7A17O14581 309 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 KLHL2O95198 593 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 ALDOAP04075 364 aaKnown RBP10.68□□□□□ -0.7
USP3-220ENST00000561381 CT62P0C5K7 136 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 CASQ1P31415 396 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 FBXW4P57775 412 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 PHEXP78562 749 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 BIKQ13323 160 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 CUL3Q13618 768 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 ACAP2Q15057 778 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 NTRK2Q16620 822 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 CES4AQ5XG92 561 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 CYP20A1Q6UW02 462 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 WDR53Q7Z5U6 358 aaPredicted RBP10.68□□□□□ -0.7
USP3-220ENST00000561381 ULK2Q8IYT8 1036 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 CLYBLQ8N0X4 340 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 L3MBTL4Q8NA19 623 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 OR52B6Q8NGF0 335 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 NEIL3Q8TAT5 605 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 NSUN5Q96P11 429 aaKnown RBP10.68□□□□□ -0.7
USP3-220ENST00000561381 PELOQ9BRX2 385 aaKnown RBP10.68□□□□□ -0.7
USP3-220ENST00000561381 VPS11Q9H270 941 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 NOL11Q9H8H0 719 aaKnown RBP10.68□□□□□ -0.7
USP3-220ENST00000561381 ACKR4Q9NPB9 350 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.68□□□□□ -0.7
USP3-220ENST00000561381 TEX10Q9NXF1 929 aaPredicted RBP10.68□□□□□ -0.7
USP3-220ENST00000561381 CNIH4Q9P003 139 aa10.68□□□□□ -0.7
USP3-220ENST00000561381 PRRC2AP48634 2157 aaKnown RBP10.67□□□□□ -0.7
USP3-220ENST00000561381 C2orf92A0A1B0GVN3 265 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 FOXE1O00358 373 aaPredicted RBP10.67□□□□□ -0.7
USP3-220ENST00000561381 UGDHO60701 494 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 TRIM3O75382 744 aaPredicted RBP10.67□□□□□ -0.7
USP3-220ENST00000561381 ZWINTO95229 277 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 SLC35E2P0CK97 266 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 GABRA1P14867 456 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 GDF1P27539 372 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 TYK2P29597 1187 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 DNAJA1P31689 397 aaKnown RBP10.67□□□□□ -0.7
USP3-220ENST00000561381 ARL1P40616 181 aaPredicted RBP10.67□□□□□ -0.7
USP3-220ENST00000561381 ART1P52961 327 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 ARFIP1P53367 373 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 DUSP8Q13202 625 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 SLC25A35Q3KQZ1 300 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 TECRLQ5HYJ1 363 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 RIPPLY2Q5TAB7 128 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 OR52E8Q6IFG1 317 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 ARSKQ6UWY0 536 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 SYT10Q6XYQ8 523 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 NUDT13Q86X67 352 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 ZZZ3Q8IYH5 903 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 DND1Q8IYX4 353 aaKnown RBP10.67□□□□□ -0.7
USP3-220ENST00000561381 PTGR2Q8N8N7 351 aaPredicted RBP10.67□□□□□ -0.7
USP3-220ENST00000561381 RELL2Q8NC24 303 aaPredicted RBP10.67□□□□□ -0.7
USP3-220ENST00000561381 NAXEQ8NCW5 288 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 DIO2Q92813 273 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 REPS1Q96D71 796 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 PHF21BQ96EK2 531 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 WDR41Q9HAD4 459 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 CXorf21Q9HAI6 301 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 ZBTB26Q9HCK0 441 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 ZDHHC18Q9NUE0 388 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 MED12Q93074 2177 aa10.67□□□□□ -0.7
USP3-220ENST00000561381 KIAA1549Q9HCM3 1950 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 C15orf38-AP3S2A0A0A6YYH1 394 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 A0A1B0GTL3 188 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 CCDC189A1A4V9 331 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 OR6C76A6NM76 312 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms