RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 HRH2P25021 359 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SLC5A2P31639 672 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CTSKP43235 329 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CAPZA2P47755 286 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 LSSP48449 732 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CLK3P49761 638 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 GPLD1P80108 840 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SRYQ05066 204 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TARDBPQ13148 414 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SELPLGQ14242 412 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SLC5A12Q1EHB4 618 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 KLHL12Q53G59 568 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PAPD4Q6PIY7 484 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ZNF730Q6ZMV8 503 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SH2D5Q6ZV89 423 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TMPRSS9Q7Z410 1059 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 GALNT7Q86SF2 657 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 RETREG3Q86VR2 466 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 RBM12BQ8IXT5 1001 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 EID3Q8N140 333 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 B4GALNT2Q8NHY0 566 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 STT3BQ8TCJ2 826 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 DAZLQ92904 295 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ZNF775Q96BV0 537 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 BDH2Q9BUT1 245 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CHID1Q9BWS9 393 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CCDC134Q9H6E4 229 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 VCX3AQ9NNX9 186 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 MS4A12Q9NXJ0 267 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 RALGAPA2Q2PPJ7 1873 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 THADAQ6YHU6 1953 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ZFYVE26Q68DK2 2539 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 A0A1W2PR48 441 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 BBIP1A8MTZ0 92 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 IDSB3KWA1 339 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 MEN1O00255 615 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CASQ2O14958 399 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ARPC2O15144 300 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PRAMEF4O60810 478 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ERN1O75460 977 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SOX14O95416 240 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 IFNW1P05000 195 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ALPPP05187 535 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 GKN3PP0CG01 181 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SLC7A1P30825 629 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 MAGEA12P43365 314 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SLC6A12P48065 614 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ARSFP54793 590 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 GABREP78334 506 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 DCDP81605 110 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CEACAM7Q14002 265 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SGCBQ16585 318 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 DPY19L1Q2PZI1 675 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TMEM35AQ53FP2 167 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TRMT12Q53H54 448 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PRAMEF9Q5VWM5 478 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 FBXO42Q6P3S6 717 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 BLOC1S3Q6QNY0 202 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ZDHHC21Q8IVQ6 265 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SLC15A3Q8IY34 581 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 LNX2Q8N448 690 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 OR4K17Q8NGC6 315 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 BAHD1Q8TBE0 780 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 MS4A6EQ96DS6 147 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TEFMQ96QE5 360 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 NR1H4Q96RI1 486 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 LRFN3Q9BTN0 628 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PRR14Q9BWN1 585 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TEX12Q9BXU0 123 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 LDAHQ9H6V9 325 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 DCLRE1BQ9H816 532 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 EXOSC4Q9NPD3 245 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 STX18Q9P2W9 335 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 NSG1A0A0A6YYJ2 146 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TRBV11-1A0A0K0K1C0 115 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PRORSD1PA6NEY8 169 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ARGFXA6NJG6 315 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TTC36A6NLP5 189 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 H3BML4 177 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 H3BSH0 61 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SCDO00767 359 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 HCRTR1O43613 425 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 FGF17O60258 216 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 UGT2B17O75795 530 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 KRT33AO76009 404 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ATP6V1G2O95670 118 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 MT-CO3P00414 261 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 FGF4P08620 206 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 LINGO3P0C6S8 592 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CD247P20963 164 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 IL12AP29459 219 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PIK3CBP42338 1070 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 KHKP50053 298 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ENPP2Q13822 863 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TRIM25Q14258 630 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SYPL1Q16563 259 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 DECR1Q16698 335 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 ATG14Q6ZNE5 492 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 LANCL3Q6ZV70 420 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 NLRP8Q86W28 1048 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms