RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CXorf58Q96LI9 332 aa3.41□□□□□ -1.86
SCFD1-221ENST00000556534 MCCC1Q96RQ3 725 aaPredicted RBP3.41□□□□□ -1.86
SCFD1-221ENST00000556534 ATP6V0BQ99437 205 aa3.41□□□□□ -1.86
SCFD1-221ENST00000556534 TTYH2Q9BSA4 534 aa3.41□□□□□ -1.86
SCFD1-221ENST00000556534 SLC5A7Q9GZV3 580 aa3.41□□□□□ -1.86
SCFD1-221ENST00000556534 AKIRIN1Q9H9L7 192 aaPredicted RBP3.41□□□□□ -1.86
SCFD1-221ENST00000556534 EIF3KQ9UBQ5 218 aaKnown RBP3.41□□□□□ -1.86
SCFD1-221ENST00000556534 MLXQ9UH92 298 aa3.41□□□□□ -1.86
SCFD1-221ENST00000556534 STX8Q9UNK0 236 aa3.41□□□□□ -1.86
SCFD1-221ENST00000556534 DIMT1Q9UNQ2 313 aaKnown RBP3.41□□□□□ -1.86
SCFD1-221ENST00000556534 POGZQ7Z3K3 1410 aa3.41□□□□□ -1.86
SCFD1-221ENST00000556534 A0A1W2PRV1 198 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 DDX39AO00148 427 aaKnown RBP3.4□□□□□ -1.87
SCFD1-221ENST00000556534 LRRTM2O43300 516 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 TSPAN2O60636 221 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 SRPX2O60687 465 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-221ENST00000556534 KERAO60938 352 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 OLFM2O95897 454 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 PIGRP01833 764 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 GIG44P09565 113 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-221ENST00000556534 STMN1P16949 149 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 CASP3P42574 277 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 RPL34P49207 117 aaKnown RBP3.4□□□□□ -1.87
SCFD1-221ENST00000556534 NME5P56597 212 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 LTB4RQ15722 352 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 SGCBQ16585 318 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 C2orf76Q3KRA6 126 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 TIMM50Q3ZCQ8 353 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 SLC22A6Q4U2R8 563 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 C14orf28Q4W4Y0 310 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 MPPE1Q53F39 396 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 UTF1Q5T230 341 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 RHBDD2Q6NTF9 364 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 NAXDQ8IW45 347 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 C11orf53Q8IXP5 236 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 SFRP1Q8N474 314 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 LPCAT1Q8NF37 534 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 GTSF1Q8WW33 167 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 SPAG8Q99932 426 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-221ENST00000556534 JPH2Q9BR39 696 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-221ENST00000556534 SLC26A1Q9H2B4 701 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 PNNQ9H307 717 aaKnown RBP3.4□□□□□ -1.87
SCFD1-221ENST00000556534 DCLRE1BQ9H816 532 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 Q9HAA7 133 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 IL1RL2Q9HB29 575 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 CUTCQ9NTM9 273 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 DDX28Q9NUL7 540 aaKnown RBP3.4□□□□□ -1.87
SCFD1-221ENST00000556534 ABCD2Q9UBJ2 740 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 MAD2L2Q9UI95 211 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 FBXW2Q9UKT8 454 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 RNF24Q9Y225 148 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 VSIG4Q9Y279 399 aa3.4□□□□□ -1.87
SCFD1-221ENST00000556534 RTN2O75298 545 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 FCER2P06734 321 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 HMOX1P09601 288 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 HLA-DPA1P20036 260 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 BRCC3P46736 316 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 SMSP52788 366 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 IST1P53990 364 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 SLC12A3P55017 1021 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 GEMP55040 296 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 PPIAP62937 165 aaKnown RBP3.39□□□□□ -1.87
SCFD1-221ENST00000556534 TRA2BP62995 288 aaKnown RBP3.39□□□□□ -1.87
SCFD1-221ENST00000556534 RPA4Q13156 261 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 ABRAXAS2Q15018 415 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 HFEQ30201 348 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 ABRAXAS1Q6UWZ7 409 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 ZNF600Q6ZNG1 722 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 CNTN4Q8IWV2 1026 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 SLC22A18ASQ8N1D0 253 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 ZNF619Q8N2I2 560 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 OR4A16Q8NH70 328 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 RSPH1Q8WYR4 309 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 CFAP36Q96G28 342 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 COG3Q96JB2 828 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 SLITRK2Q9H156 845 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 GANQ9H2C0 597 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 ABCC13Q9NSE7 274 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 ACOXLQ9NUZ1 547 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 DNAJC11Q9NVH1 559 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 TAS2R16Q9NYV7 291 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 RCOR3Q9P2K3 495 aaPredicted RBP3.39□□□□□ -1.87
SCFD1-221ENST00000556534 ATG4BQ9Y4P1 393 aa3.39□□□□□ -1.87
SCFD1-221ENST00000556534 IGKV6D-41A0A0C4DH26 115 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 ZSCAN5CA6NGD5 496 aaPredicted RBP3.38□□□□□ -1.87
SCFD1-221ENST00000556534 YJEFN3A6XGL0 299 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 KLLNB2CW77 178 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 SLC28A1O00337 649 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 PPP2R1BP30154 601 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 STIP1P31948 543 aaKnown RBP3.38□□□□□ -1.87
SCFD1-221ENST00000556534 HMGCS2P54868 508 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 KIAA1024LP59773 190 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 HERV-K104P63124 156 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 GSTO1P78417 241 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 KLF5Q13887 457 aaPredicted RBP3.38□□□□□ -1.87
SCFD1-221ENST00000556534 CRMP1Q14194 572 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 RAB12Q6IQ22 244 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 STEAP1BQ6NZ63 245 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 GPR142Q7Z601 462 aa3.38□□□□□ -1.87
SCFD1-221ENST00000556534 FBXW8Q8N3Y1 598 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms