RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 WDR41Q9HAD4 459 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 KCNK13Q9HB14 408 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 UBE2TQ9NPD8 197 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 DEPPQ9NTK1 212 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 THYN1Q9P016 225 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 AKAP7Q9P0M2 348 aaPredicted RBP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 DIMT1Q9UNQ2 313 aaKnown RBP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 NIP7Q9Y221 180 aaKnown RBP eCLIP2.31□□□□□ -2.04
SCFD1-218ENST00000556256 NPC1L1Q9UHC9 1359 aa2.31□□□□□ -2.04
SCFD1-218ENST00000556256 LOC390937A0A1W2PQ73 354 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 BCLAF3A2AJT9 711 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 ARPC1BO15143 372 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF354AO60765 605 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 LY6G6DO95868 133 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 LYNP07948 512 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 HCKP08631 526 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 CCDC159P0C7I6 412 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 ADORA3P0DMS8 318 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 CD1DP15813 335 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 FERP16591 822 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 STMN1P16949 149 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 AHCYP23526 432 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 STIP1P31948 543 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 ALDH3B1P43353 468 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 MTIF2P46199 727 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 NSFP46459 744 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 PITPNBP48739 271 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 ATP4BP51164 291 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 TKTL1P51854 596 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 SLC12A3P55017 1021 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 NDUFV3P56181 108 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 RPS27AP62979 156 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 CCZ1BP86790 482 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 CCZ1P86791 482 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 GFPT1Q06210 699 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 SLC17A1Q14916 467 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 EXOSC7Q15024 291 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 SIX1Q15475 284 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 PKN2Q16513 984 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 HERC4Q5GLZ8 1057 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 DCAF12Q5T6F0 453 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 WDR25Q64LD2 544 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 ETFRF1Q6IPR1 90 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 RHBDD2Q6NTF9 364 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 Q6ZRG5 221 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 CDHR3Q6ZTQ4 885 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 TOM1L2Q6ZVM7 507 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 NUFIP2Q7Z417 695 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 RPAINQ86UA6 219 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 CHDHQ8NE62 594 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 OR1B1Q8NGR6 318 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 OR4F5Q8NH21 305 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 EXOC6Q8TAG9 804 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 KIAA1524Q8TCG1 905 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 TMEM186Q96B77 213 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 CXorf58Q96LI9 332 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 RUNDC3BQ96NL0 473 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 RCHY1Q96PM5 261 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 TAAR6Q96RI8 345 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 PSMB7Q99436 277 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 YTHDF1Q9BYJ9 559 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 MOB1AQ9H8S9 216 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 GPN1Q9HCN4 374 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 ANO10Q9NW15 660 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 FETUBQ9UGM5 382 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 NARFQ9UHQ1 456 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 MRTO4Q9UKD2 239 aaKnown RBP2.3□□□□□ -2.04
SCFD1-218ENST00000556256 GPRASP1Q5JY77 1395 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 PTPRUQ92729 1446 aa2.3□□□□□ -2.04
SCFD1-218ENST00000556256 ABCC9O60706 1549 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 SALL1Q9NSC2 1324 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 TRGV8A0A0C4DH27 118 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 IGHV3-16A0A0C4DH30 117 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 MACROD2A1Z1Q3 448 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 IGLON5A6NGN9 336 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 CCDC69A6NI79 296 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 YJEFN3A6XGL0 299 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 CDX4O14627 284 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 CHEK1O14757 476 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 HTATSF1O43719 755 aaKnown RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 NME2P1O60361 137 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 TSPAN2O60636 221 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ANXA9O76027 345 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 SEMA4FO95754 770 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 PDGFBP01127 241 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 FCER2P06734 321 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 EZRP15311 586 aaKnown RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 FOSL2P15408 326 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ACP1P24666 158 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 MAT2AP31153 395 aaKnown RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 SLC1A6P48664 564 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 GSK3BP49841 420 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 CCL11P51671 97 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 HNRNPFP52597 415 aaKnown RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 GEMP55040 296 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 SRP54P61011 504 aaKnown RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 FASTKQ14296 549 aaKnown RBP2.29□□□□□ -2.04
SCFD1-218ENST00000556256 KRT31Q15323 416 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 P2RY14Q15391 338 aa2.29□□□□□ -2.04
SCFD1-218ENST00000556256 ZNF528Q3MIS6 628 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms