RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 APOL4Q9BPW4 351 aa16.42■□□□□ 0.22
SHOX-204ENST00000554971 BHLHE41Q9C0J9 482 aaPredicted RBP16.42■□□□□ 0.22
SHOX-204ENST00000554971 ATAD3AQ9NVI7 634 aa16.42■□□□□ 0.22
SHOX-204ENST00000554971 TAC3Q9UHF0 121 aa16.42■□□□□ 0.22
SHOX-204ENST00000554971 PSME2Q9UL46 239 aa16.42■□□□□ 0.22
SHOX-204ENST00000554971 FER1L5A0AVI2 2057 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 BCKDKO14874 412 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 JRKO75564 520 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 ZNF682O95780 498 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 ANXA4P09525 319 aaPredicted RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 YAP1P46937 504 aaKnown RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 SEPHS1P49903 392 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 CSNK2BP67870 215 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 FOXC1Q12948 553 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 TSTA3Q13630 321 aaPredicted RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 HIST2H2ACQ16777 129 aaPredicted RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 HIST2H2AA3Q6FI13 130 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 ARMC6Q6NXE6 501 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 PTOV1Q86YD1 416 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 KLHL6Q8WZ60 621 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 UBE2E3Q969T4 207 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 PPP1R14BQ96C90 147 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 CD180Q99467 661 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 MTERF1Q99551 399 aaKnown RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 EBPLQ9BY08 206 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 ZNF768Q9H5H4 540 aaKnown RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 CCDC177Q9NQR7 707 aaPredicted RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 C1GALT1Q9NS00 363 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 UTS2RQ9UKP6 389 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 KLK13Q9UKR3 277 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 VPS4AQ9UN37 437 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 TPRKBQ9Y3C4 175 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 SLC9B1P1A6NJY1 282 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 GABRR3A8MPY1 467 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 TOX3O15405 576 aaPredicted RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 LAMP1P11279 417 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 NPPBP16860 134 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 MAGP20916 626 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 TIA1P31483 386 aaKnown RBP eCLIP16.41■□□□□ 0.22
SHOX-204ENST00000554971 POLR2IP36954 125 aaKnown RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 PIGAP37287 484 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 CAMK2BQ13554 666 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 SF1Q15637 639 aaKnown RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 SLC5A12Q1EHB4 618 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 ZNF829Q3KNS6 432 aaPredicted RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 LINC00299Q6ZSB3 139 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 LAS2Q8IYD9 372 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 FAM81AQ8TBF8 368 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 SLC22A18Q96BI1 424 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 NODALQ96S42 347 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 SLC6A20Q9NP91 592 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 ADPRHL2Q9NX46 363 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 FAF1Q9UNN5 650 aaPredicted RBP16.41■□□□□ 0.22
SHOX-204ENST00000554971 DYRK1BQ9Y463 629 aa16.41■□□□□ 0.22
SHOX-204ENST00000554971 C1orf226A1L170 272 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 SLC1A7O00341 560 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 HCRTR1O43613 425 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 CPSF4O95639 269 aaKnown RBP16.4■□□□□ 0.22
SHOX-204ENST00000554971 CDH3P22223 829 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 PTX3P26022 381 aaPredicted RBP16.4■□□□□ 0.22
SHOX-204ENST00000554971 PCGF2P35227 344 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 ITGA1P56199 1179 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 RAE1P78406 368 aaKnown RBP16.4■□□□□ 0.22
SHOX-204ENST00000554971 RBBP4Q09028 425 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 NFATC3Q12968 1075 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 CDK5R2Q13319 367 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 TRA2AQ13595 282 aaKnown RBP eCLIP16.4■□□□□ 0.22
SHOX-204ENST00000554971 MOGQ16653 247 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 MEP1AQ16819 746 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 TSPYL5Q86VY4 417 aaPredicted RBP16.4■□□□□ 0.22
SHOX-204ENST00000554971 ZC3H7AQ8IWR0 971 aaKnown RBP16.4■□□□□ 0.22
SHOX-204ENST00000554971 HS3ST5Q8IZT8 346 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 C1orf52Q8N6N3 182 aaKnown RBP16.4■□□□□ 0.22
SHOX-204ENST00000554971 HUS1BQ8NHY5 278 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 MUL1Q969V5 352 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 MTERF3Q96E29 417 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 LIN37Q96GY3 246 aaPredicted RBP16.4■□□□□ 0.22
SHOX-204ENST00000554971 SLC41A2Q96JW4 573 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 EPYCQ99645 322 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 CHST8Q9H2A9 424 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 FAM60AQ9NP50 221 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 PALMDQ9NP74 551 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 CCNB1IP1Q9NPC3 277 aa16.4■□□□□ 0.22
SHOX-204ENST00000554971 CUEDC1Q9NWM3 386 aaPredicted RBP16.4■□□□□ 0.22
SHOX-204ENST00000554971 A0A0J9YY10 115 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 PRDX1Q06830 199 aaKnown RBP16.39■□□□□ 0.21
SHOX-204ENST00000554971 KCNAB1Q14722 419 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 CTU2Q2VPK5 515 aaKnown RBP16.39■□□□□ 0.21
SHOX-204ENST00000554971 PRAMEF13Q5VWM6 474 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 BMPERQ8N8U9 685 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 ZFP90Q8TF47 636 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 BORCS5Q969J3 196 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 SCNM1Q9BWG6 230 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 OCEL1Q9H607 264 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 REEP1Q9H902 201 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 SYNPO2LQ9H987 977 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 OCIAD1Q9NX40 245 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 SIDT1Q9NXL6 827 aaKnown RBP16.39■□□□□ 0.21
SHOX-204ENST00000554971 SCN3BQ9NY72 215 aa16.39■□□□□ 0.21
SHOX-204ENST00000554971 SDK2Q58EX2 2172 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms