RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 EIF2S1P05198 315 aaKnown RBP24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 NR2F1P10589 423 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 RHCEP18577 417 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 PRKAG1P54619 331 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 CDH15P55291 814 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 NXPH1P58417 271 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 PPP1CAP62136 330 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 SPIBQ01892 262 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 KEAP1Q14145 624 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 DUSP7Q16829 419 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 PRAMEF8Q5VWM4 474 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 PRAMEF7Q5VXH5 474 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 BORAQ6PGQ7 559 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 GALNT5Q7Z7M9 940 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 LRRC25Q8N386 305 aaPredicted RBP24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 OR5D16Q8NGK9 328 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 OR9A2Q8NGT5 310 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 HDAC2Q92769 488 aaKnown RBP24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 HSPA12BQ96MM6 686 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 LDHAL6BQ9BYZ2 381 aaPredicted RBP24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 YIPF3Q9GZM5 350 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 MIR1-1HGQ9H1L0 117 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 KRT84Q9NSB2 600 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 DDX18Q9NVP1 670 aaKnown RBP24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 NTMQ9P121 344 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 PCDHGA8Q9Y5G5 932 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 GPC6Q9Y625 555 aaPredicted RBP24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 SPACA6W5XKT8 324 aa24.79■■□□□ 1.56
CCDC88C-205ENST00000553403 A0A1W2PS29 197 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 A8MVJ9 347 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 RECKO95980 971 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 HMGN2P05204 90 aaKnown RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 ALPPL2P10696 532 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 KCNJ5P48544 419 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 HLCSP50747 726 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 SYPL1Q16563 259 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 ZNF438Q7Z4V0 828 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 ZNF605Q86T29 641 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 C17orf82Q86X59 251 aaPredicted RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 KRT73Q86Y46 540 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 LGI4Q8N135 537 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 NUP43Q8NFH3 380 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 C1orf216Q8TAB5 229 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 PROX1Q92786 737 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 DGCR14Q96DF8 476 aaKnown RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 TREX2Q9BQ50 279 aaPredicted RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 CCDC3Q9BQI4 270 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 SH3GLB1Q9Y371 365 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 HSPE1-MOB4S4R3N1 261 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 ASNA1O43681 348 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 FESP07332 822 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 ST6GAL1P15907 406 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 HMGA2P52926 109 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 CRISP3P54108 245 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 HNRNPKP61978 463 aaKnown RBP eCLIP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 TOP3AQ13472 1001 aaPredicted RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 LASP1Q14847 261 aaKnown RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 USP53Q70EK8 1073 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 C19orf47Q8N9M1 422 aaKnown RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 SETD9Q8NE22 299 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 GPR32P1Q8NGA4 272 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 NPLQ9BXD5 320 aaPredicted RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 RIBC2Q9H4K1 309 aa24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 MRPS2Q9Y399 296 aaKnown RBP24.78■■□□□ 1.56
CCDC88C-205ENST00000553403 PRR33A8MZF0 331 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 CDH3P22223 829 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 ELK4P28324 431 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 MC3RP41968 323 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 XKP51811 444 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 VSX2P58304 361 aaPredicted RBP24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 CYP27C1Q4G0S4 372 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 UBALD2Q8IYN6 164 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 FBLIM1Q8WUP2 373 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 ZNF354BQ96LW1 612 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 CSF3RQ99062 836 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 PSD2Q9BQI7 771 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 SPATA5L1Q9BVQ7 753 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 HCN4Q9Y3Q4 1203 aa24.77■■□□□ 1.56
CCDC88C-205ENST00000553403 GALR3O60755 368 aaPredicted RBP24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 ANXA8P13928 327 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 ETS2P15036 469 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 PTGER1P34995 402 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 POLR2IP36954 125 aaKnown RBP24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 CDH12P55289 794 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 ISL1P61371 349 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 PUM1Q14671 1186 aaKnown RBP eCLIP24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 MICAQ29983 383 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 CNPY1Q3B7I2 92 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 C6orf141Q5SZD1 244 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 TTC29Q8NA56 475 aaPredicted RBP24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 CHDHQ8NE62 594 aaPredicted RBP24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 COL21A1Q96P44 957 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 BTBD2Q9BX70 525 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 RBM38Q9H0Z9 239 aaKnown RBP24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 C11orf16Q9NQ32 467 aa24.76■■□□□ 1.55
CCDC88C-205ENST00000553403 E9PQ18 207 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 STK25O00506 426 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 AQP9O43315 295 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 DNAJB6O75190 326 aa24.75■■□□□ 1.55
CCDC88C-205ENST00000553403 OR6B1O95007 311 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms