RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

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Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 NFKBIL1Q9UBC1 381 aaPredicted RBP16.63■□□□□ 0.25
SYNE3-202ENST00000553340 DKK3Q9UBP4 350 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 PLXNA2O75051 1894 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 AGRPO00253 132 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 MMP20O60882 483 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 PSKH1P11801 424 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 APEX1P27695 318 aaKnown RBP16.63■□□□□ 0.25
SYNE3-202ENST00000553340 GIPRP48546 466 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 SLC7A9P82251 487 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 PIN1Q13526 163 aaPredicted RBP16.63■□□□□ 0.25
SYNE3-202ENST00000553340 TPBGQ13641 420 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 OR2G6Q5TZ20 316 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 PLCZ1Q86YW0 608 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 SYT14Q8NB59 555 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 ZNF740Q8NDX6 193 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 ZC3HAV1LQ96H79 300 aaKnown RBP16.63■□□□□ 0.25
SYNE3-202ENST00000553340 PRRG3Q9BZD7 231 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 RBFOX1Q9NWB1 397 aaKnown RBP16.63■□□□□ 0.25
SYNE3-202ENST00000553340 TOR4AQ9NXH8 423 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 COMMD3Q9UBI1 195 aa16.63■□□□□ 0.25
SYNE3-202ENST00000553340 TMEM129A0AVI4 362 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 IRGMA1A4Y4 181 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 WASH3PC4AMC7 463 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 ANHXE9PGG2 379 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 ERVH48-1M5A8F1 160 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 HLA-DQB1P01920 261 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 PRKAR1AP10644 381 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 ACADMP11310 421 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 MAN2A2P49641 1150 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 GZMKP49863 264 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 SPDYE7PQ495Y7 208 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 PODNL1Q6PEZ8 512 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 QSOX2Q6ZRP7 698 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 GAREM2Q75VX8 874 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 C6orf120Q7Z4R8 191 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 Q8N402 240 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 GATAD2BQ8WXI9 593 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 TM9SF4Q92544 642 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 UFD1Q92890 307 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 GIMAP4Q9NUV9 329 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 AHSPQ9NZD4 102 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 SF3B6Q9Y3B4 125 aaKnown RBP16.62■□□□□ 0.25
SYNE3-202ENST00000553340 OBSL1O75147 1896 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 ZNF780AO75290 641 aaPredicted RBP16.62■□□□□ 0.25
SYNE3-202ENST00000553340 DDCP20711 480 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 HTR2BP41595 481 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 TAP2Q03519 686 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 ACSM5Q6NUN0 579 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 KIAA1211LQ6NV74 962 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 CD300LDQ6UXZ3 194 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 NLGN4YQ8NFZ3 816 aaPredicted RBP16.62■□□□□ 0.25
SYNE3-202ENST00000553340 OR9A1PQ8NGU1 263 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 PPP1R16AQ96I34 528 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 TM9SF2Q99805 663 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 WFDC6Q9BQY6 131 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 NIPAL2Q9H841 368 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 NEUROD4Q9HD90 331 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 ISYNA1Q9NPH2 558 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 SLAMF7Q9NQ25 335 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 SPG21Q9NZD8 308 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 A4GNTQ9UNA3 340 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 ALG5Q9Y673 324 aa16.62■□□□□ 0.25
SYNE3-202ENST00000553340 A0A1W2PRQ8 180 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 SNTNA6NMZ2 147 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 PDPK1O15530 556 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 GPLD1P80108 840 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 C19orf57Q0VDD7 668 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 RAB40BQ12829 278 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 SNAPC1Q16533 368 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 ASTLQ6HA08 431 aaPredicted RBP16.61■□□□□ 0.25
SYNE3-202ENST00000553340 CNIH2Q6PI25 160 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 SLC9B2Q86UD5 537 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 CFAP206Q8IYR0 622 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 NATD1Q8N6N6 113 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 DUSP18Q8NEJ0 188 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 TMEM163Q8TC26 289 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 FNDC11Q9BVV2 318 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 PCDHGB7Q9Y5F8 929 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 HMGN4O00479 90 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 CASKO14936 926 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 LEFTY1O75610 366 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 C1QBP02746 253 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 ACP2P11117 423 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 XPAP23025 273 aaPredicted RBP16.61■□□□□ 0.25
SYNE3-202ENST00000553340 MMP11P24347 488 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 FGF9P31371 208 aaPredicted RBP16.61■□□□□ 0.25
SYNE3-202ENST00000553340 GABRA5P31644 462 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 TNK1Q13470 666 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 FAM209AQ5JX71 171 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 METAP1DQ6UB28 335 aaPredicted RBP16.61■□□□□ 0.25
SYNE3-202ENST00000553340 ZER1Q7Z7L7 766 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 LINC00471Q8N535 108 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 AP2M1Q96CW1 435 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 PPP1R3EQ9H7J1 279 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 FGF20Q9NP95 211 aaPredicted RBP16.61■□□□□ 0.25
SYNE3-202ENST00000553340 MRPS18AQ9NVS2 196 aaKnown RBP16.61■□□□□ 0.25
SYNE3-202ENST00000553340 ING3Q9NXR8 418 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 CASP8AP2Q9UKL3 1982 aa16.61■□□□□ 0.25
SYNE3-202ENST00000553340 FAM240BA0A1B0GVZ2 78 aa16.6■□□□□ 0.25
SYNE3-202ENST00000553340 LEFTY2O00292 366 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms