RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ANKRD10Q9NXR5 420 aa13.12□□□□□ -0.31
PTCH1-226ENST00000553011 EHD3Q9NZN3 535 aa13.12□□□□□ -0.31
PTCH1-226ENST00000553011 COPS7AQ9UBW8 275 aa13.12□□□□□ -0.31
PTCH1-226ENST00000553011 MARCOQ9UEW3 520 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-226ENST00000553011 B3GNT3Q9Y2A9 372 aa13.12□□□□□ -0.31
PTCH1-226ENST00000553011 TMED5Q9Y3A6 229 aa13.12□□□□□ -0.31
PTCH1-226ENST00000553011 ZNF780BQ9Y6R6 833 aa13.12□□□□□ -0.31
PTCH1-226ENST00000553011 EXPH5Q8NEV8 1989 aa13.12□□□□□ -0.31
PTCH1-226ENST00000553011 NINQ8N4C6 2090 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 OR5H15A6NDH6 313 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 AKAP10O43572 662 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 SORBS2O94875 1100 aaKnown RBP13.11□□□□□ -0.31
PTCH1-226ENST00000553011 LRATO95237 230 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 CLPSP04118 112 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 SSTR4P31391 388 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 TNFSF10P50591 281 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 RNF4P78317 190 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 TUBA3CQ13748 450 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 TUBA3EQ6PEY2 450 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 IKBIPQ70UQ0 350 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 C9orf40Q8IXQ3 194 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 CCDC116Q8IYX3 515 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 ARMC10Q8N2F6 343 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 LRRC25Q8N386 305 aaPredicted RBP13.11□□□□□ -0.31
PTCH1-226ENST00000553011 ART5Q96L15 291 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 NUF2Q9BZD4 464 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 BRINP2Q9C0B6 783 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTCH1-226ENST00000553011 ACBD3Q9H3P7 528 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 MIEF1Q9NQG6 463 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 SLC35C2Q9NQQ7 365 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 MAT2BQ9NZL9 334 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 ABI3Q9P2A4 366 aa13.11□□□□□ -0.31
PTCH1-226ENST00000553011 WBP11Q9Y2W2 641 aaKnown RBP13.11□□□□□ -0.31
PTCH1-226ENST00000553011 WWP2O00308 870 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 KLF11O14901 512 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 SLC28A2O43868 658 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 ATP1B1P05026 303 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 KITP10721 976 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 S1PR1P21453 382 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 MAPK1P28482 360 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 SOX18P35713 384 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 CD96P40200 585 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 MLLT10P55197 1068 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 SLC37A1P57057 533 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 MGAT2Q10469 447 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 FUT7Q11130 342 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 ZNF169Q14929 603 aaPredicted RBP13.1□□□□□ -0.31
PTCH1-226ENST00000553011 TLR1Q15399 786 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 PRICKLE4Q2TBC4 344 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 PRR30Q53SZ7 412 aaPredicted RBP13.1□□□□□ -0.31
PTCH1-226ENST00000553011 IL23RQ5VWK5 629 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 ANKRD26P1Q6NSI1 321 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 RNF111Q6ZNA4 994 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 KIRREL3Q8IZU9 778 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 LIX1Q8N485 282 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 FNDC5Q8NAU1 212 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 OR8K3Q8NH51 312 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 SUN3Q8TAQ9 357 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 SIGLEC12Q96PQ1 595 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 UTP23Q9BRU9 249 aaKnown RBP13.1□□□□□ -0.31
PTCH1-226ENST00000553011 AKTIPQ9H8T0 292 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 SLAMF7Q9NQ25 335 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 GIMAP4Q9NUV9 329 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 MYOTQ9UBF9 498 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 ENTPD4Q9Y227 616 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 PCDHGA10Q9Y5H3 936 aa13.1□□□□□ -0.31
PTCH1-226ENST00000553011 GCN1Q92616 2671 aaKnown RBP13.09□□□□□ -0.31
PTCH1-226ENST00000553011 ESPL1Q14674 2120 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 TRAV17A0A0B4J275 112 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 TTLL8A6PVC2 850 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 FCHO1O14526 889 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 ITGA10O75578 1167 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 OR2J2O76002 312 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 MRPS35P82673 323 aaKnown RBP13.09□□□□□ -0.31
PTCH1-226ENST00000553011 OC90Q02509 493 aaPredicted RBP13.09□□□□□ -0.31
PTCH1-226ENST00000553011 MAP4K2Q12851 820 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 PTGR1Q14914 329 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 EXOSC7Q15024 291 aaKnown RBP13.09□□□□□ -0.31
PTCH1-226ENST00000553011 OR1C1Q15619 314 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 CEBPEQ15744 281 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 TRMT12Q53H54 448 aaKnown RBP13.09□□□□□ -0.31
PTCH1-226ENST00000553011 ZNF385BQ569K4 471 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 C6orf163Q5TEZ5 329 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 SPINK14Q6IE38 97 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 ZNF605Q86T29 641 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 WDR75Q8IWA0 830 aaKnown RBP13.09□□□□□ -0.31
PTCH1-226ENST00000553011 VWA5B2Q8N398 1253 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 SIMC1Q8NDZ2 872 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 OR9A2Q8NGT5 310 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 LRRC8CQ8TDW0 803 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 DYDC1Q8WWB3 177 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 KAT2AQ92830 837 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 BBS4Q96RK4 519 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 GAL3ST4Q96RP7 486 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 TRIM4Q9C037 500 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 REEP4Q9H6H4 257 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 MEAF6Q9HAF1 191 aa13.09□□□□□ -0.31
PTCH1-226ENST00000553011 INTS9Q9NV88 658 aaKnown RBP13.09□□□□□ -0.31
PTCH1-226ENST00000553011 TAS2R7Q9NYW3 318 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms