RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ZNF234Q14588 700 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 SLC39A14Q15043 492 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 EFNB3Q15768 340 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 INAQ16352 499 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 ACKR1Q16570 336 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 PRTGQ2VWP7 1150 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 DCAF4L1Q3SXM0 396 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 NADK2Q4G0N4 442 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 AARDQ4LEZ3 155 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 LACTB2Q53H82 288 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 FNBP1LQ5T0N5 605 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 PRAMEF8Q5VWM4 474 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 TMEM215Q68D42 235 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 LCN10Q6JVE6 187 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 SLC18B1Q6NT16 456 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 FAM122CQ6P4D5 195 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 BRAT1Q6PJG6 821 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 MFSD7Q6UXD7 560 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 RBM43Q6ZSC3 357 aaKnown RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 PLEKHM3Q6ZWE6 761 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 EFL1Q7Z2Z2 1120 aaKnown RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 TIPARPQ7Z3E1 657 aaKnown RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 YTHDF3Q7Z739 585 aaKnown RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 EXOC3L1Q86VI1 746 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 CDK20Q8IZL9 346 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 SLC34A3Q8N130 599 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 KDM8Q8N371 416 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 GBGT1Q8N5D6 347 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 OR4C6Q8NH72 309 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 VANGL1Q8TAA9 524 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 OCC1Q8TAD7 63 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 SPPL2BQ8TCT7 592 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 GANCQ8TET4 914 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 WFIKKN2Q8TEU8 576 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 CKAP2Q8WWK9 683 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 WASF1Q92558 559 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 DAZLQ92904 295 aaKnown RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 C19orf60Q96EN9 201 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 PGM2Q96G03 612 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 OXNAD1Q96HP4 312 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 SERAC1Q96JX3 654 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 NSMCE2Q96MF7 247 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 ZNF560Q96MR9 790 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 TCHPQ9BT92 498 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 BBS2Q9BXC9 721 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 MIS12Q9H081 205 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 ZMYND12Q9H0C1 365 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 NEUROG2Q9H2A3 272 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 LHX5Q9H2C1 402 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 KCNN2Q9H2S1 579 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 SYNDIG1Q9H7V2 258 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 C6orf50Q9HD87 102 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 SLCO1C1Q9NYB5 712 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 NPAP1Q9NZP6 1156 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 THAP10Q9P2Z0 257 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 PISDQ9UG56 409 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 TINAGQ9UJW2 476 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 DDX19BQ9UMR2 479 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 PCDHA12Q9UN75 941 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 RPH3AQ9Y2J0 694 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 HS3ST3B1Q9Y662 390 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 PRRC2AP48634 2157 aaKnown RBP3.5□□□□□ -1.85
LIMA1-208ENST00000551691 PKD1L1Q8TDX9 2849 aa3.5□□□□□ -1.85
LIMA1-208ENST00000551691 TNRC6AQ8NDV7 1962 aaKnown RBP3.49□□□□□ -1.85
LIMA1-208ENST00000551691 A0A0G2JK05 382 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 TRBV2A0A0J9YWF9 115 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 A0A1W2PPQ1 181 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 OR2M5A3KFT3 312 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 EFCAB7A8K855 629 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 J3KR12 359 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 K7ERI5 159 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 COCHO43405 550 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 CXCL8P10145 99 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 ODC1P11926 461 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 CD99P14209 185 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 LIFP15018 202 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 TCF4P15884 667 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 ZNF18P17022 549 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 MPZP25189 248 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 MAT2AP31153 395 aaKnown RBP3.49□□□□□ -1.85
LIMA1-208ENST00000551691 MNDAP41218 407 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 MMP13P45452 471 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 PEX5P50542 639 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 SMSP52788 366 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 MFAP3P55082 362 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 SEC61A1P61619 476 aaKnown RBP3.49□□□□□ -1.85
LIMA1-208ENST00000551691 KLHL30Q0D2K2 578 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 TAF10Q12962 218 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 ENPP2Q13822 863 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 VEZF1Q14119 521 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 PDIA5Q14554 519 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 RBBP7Q16576 425 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 SGCBQ16585 318 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 CTU2Q2VPK5 515 aaKnown RBP3.49□□□□□ -1.85
LIMA1-208ENST00000551691 HFEQ30201 348 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 LBHQ53QV2 105 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-208ENST00000551691 EFHC1Q5JVL4 640 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 NDUFAF5Q5TEU4 345 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 FAM46CQ5VWP2 391 aa3.49□□□□□ -1.85
LIMA1-208ENST00000551691 C9orf57Q5W0N0 161 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms