RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 ARFGAP2Q8N6H7 521 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 TMEM178AQ8NBL3 297 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 PLPP5Q8NEB5 264 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 FAM76AQ8TAV0 307 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 TWIST2Q8WVJ9 160 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 ZNF75CPQ92670 426 aaPredicted RBP8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 PEX11GQ96HA9 241 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 HBEGFQ99075 208 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 TMUB1Q9BVT8 246 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 MRPL1Q9BYD6 325 aaKnown RBP8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 VN1R1Q9GZP7 353 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 TUBB1Q9H4B7 451 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 PRDM9Q9NQV7 894 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 LANCL2Q9NS86 450 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 INTS9Q9NV88 658 aaKnown RBP8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 LYARQ9NX58 379 aaKnown RBP8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 PHF11Q9UIL8 331 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 MRPS33Q9Y291 106 aaKnown RBP8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 MMACHCQ9Y4U1 282 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 CCL27Q9Y4X3 112 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 SPACA6W5XKT8 324 aa8.11□□□□□ -1.11
CLSTN3-212ENST00000541770 DCHS2Q6V1P9 2916 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 AKAP9Q99996 3911 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 SETD2Q9BYW2 2564 aaPredicted RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 LOC102723996A0A087X1L8 192 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 A0A1W2PQ72 361 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 TMEM233B4DJY2 109 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 E9PLN8 166 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 CLDN4O14493 209 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 PROM1O43490 865 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 RGS14O43566 566 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 TMPRSS11DO60235 418 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 CDC40O60508 579 aaKnown RBP eCLIP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 GUCY1B2O75343 617 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 EEDO75530 441 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 KLK1P06870 262 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 FAM58BPP0C7Q3 252 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 KLK2P20151 261 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 TPP2P29144 1249 aaPredicted RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 DNAJA1P31689 397 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 CD96P40200 585 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 GSTM5P46439 218 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 RPL14P50914 215 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 HSD17B7P56937 341 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 TRA2BP62995 288 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 OCRLQ01968 901 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 RHAGQ02094 409 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 ACSM2AQ08AH3 577 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 KIAA0040Q15053 153 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 MEP1AQ16819 746 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 IMPG1Q17R60 797 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 XKR7Q5GH72 579 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 ACSM2BQ68CK6 577 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 CYP20A1Q6UW02 462 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 SCIMPQ6UWF3 145 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 Q6ZSR9 355 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 LANCL3Q6ZV70 420 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 CPEB2Q7Z5Q1 589 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 GPR180Q86V85 440 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 CRLF3Q8IUI8 442 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 SHISA5Q8N114 240 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 C1orf52Q8N6N3 182 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 ZNF781Q8N8C0 355 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 CHDHQ8NE62 594 aaPredicted RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 C7orf57Q8NEG2 295 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 PHF10Q8WUB8 498 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 DYDC1Q8WWB3 177 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 APIPQ96GX9 242 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 IMMP1LQ96LU5 166 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 FRMD6Q96NE9 622 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 MAPKAP1Q9BPZ7 522 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 VKORC1Q9BQB6 163 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 SORBS1Q9BX66 1292 aaKnown RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 UCK2Q9BZX2 261 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 GSX1Q9H4S2 264 aaPredicted RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 ZNF395Q9H8N7 513 aaPredicted RBP8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 PFDN4Q9NQP4 134 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 MCM8Q9UJA3 840 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 FIS1Q9Y3D6 152 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 ASB4Q9Y574 426 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 SCN3AQ9NY46 2000 aa8.1□□□□□ -1.11
CLSTN3-212ENST00000541770 ITPR3Q14573 2671 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 IGKV3D-11A0A0A0MRZ8 115 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 GABRR3A8MPY1 467 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 SLCO1B7G3V0H7 640 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 PIP5K1BO14986 540 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 LSM1O15116 133 aaKnown RBP8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 MAN1A2O60476 641 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 PRMT3O60678 531 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 CTNSO60931 367 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 SP1P08047 785 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 LINC00032P0C843 101 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 ZNF24P17028 368 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 CPN2P22792 545 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 TLX1P31314 330 aaPredicted RBP8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 TIA1P31483 386 aaKnown RBP eCLIP8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 BUD31P41223 144 aaPredicted RBP8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 HK2P52789 917 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 EFNA3P52797 238 aa8.09□□□□□ -1.11
CLSTN3-212ENST00000541770 MAPK12P53778 367 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms