RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 RIBC1Q8N443 379 aaPredicted RBP13.67□□□□□ -0.22
USP28-204ENST00000537642 CCDC63Q8NA47 563 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 GOLM1Q8NBJ4 401 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 OR2M7Q8NG81 312 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 SLC22A8Q8TCC7 542 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 CAVIN3Q969G5 261 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 C11orf24Q96F05 449 aaPredicted RBP13.67□□□□□ -0.22
USP28-204ENST00000537642 SGCZQ96LD1 299 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 GAL3ST4Q96RP7 486 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 WWTR1Q9GZV5 400 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 TNFRSF12AQ9NP84 129 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 MKS1Q9NXB0 559 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 HEY2Q9UBP5 337 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 LGALS13Q9UHV8 139 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 SH3BGRL2Q9UJC5 107 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 DNAJC13O75165 2243 aa13.67□□□□□ -0.22
USP28-204ENST00000537642 CCDC151A5D8V7 595 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 G3V3Y1 287 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 TFECO14948 347 aaPredicted RBP13.66□□□□□ -0.22
USP28-204ENST00000537642 HS6ST1O60243 411 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 PCDH7O60245 1069 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 ERAL1O75616 437 aaKnown RBP13.66□□□□□ -0.22
USP28-204ENST00000537642 CCL3P10147 92 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 S1PR1P21453 382 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 NT5EP21589 574 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 DEKP35659 375 aaKnown RBP13.66□□□□□ -0.22
USP28-204ENST00000537642 FEN1P39748 380 aaKnown RBP13.66□□□□□ -0.22
USP28-204ENST00000537642 DUSP2Q05923 314 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 BTKQ06187 659 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 ACSM2AQ08AH3 577 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 ZNF791Q3KP31 576 aaPredicted RBP13.66□□□□□ -0.22
USP28-204ENST00000537642 SPIN4Q56A73 249 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 CMPK2Q5EBM0 449 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 CFAP157Q5JU67 520 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 LIPMQ5VYY2 423 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 ACSM2BQ68CK6 577 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 FGD2Q7Z6J4 655 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 C10orf107Q8IVU9 208 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 SLC15A4Q8N697 577 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 ZNF615Q8N8J6 731 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 ZNF441Q8N8Z8 693 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 BANPQ8N9N5 519 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 MAGED4Q96JG8 741 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 FAIM2Q9BWQ8 316 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 SH2D2AQ9NP31 389 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 TINAGQ9UJW2 476 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 PLLPQ9Y342 182 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 NINQ8N4C6 2090 aa13.66□□□□□ -0.22
USP28-204ENST00000537642 GOLGA6L10A6NI86 522 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 H3BQF6 201 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 CCL21O00585 134 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 IL3P08700 152 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 CNR1P21554 472 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 SERPINB3P29508 390 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 TIA1P31483 386 aaKnown RBP eCLIP13.65□□□□□ -0.22
USP28-204ENST00000537642 SOX18P35713 384 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 ALDH9A1P49189 494 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 IFFO1Q0D2I5 559 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 MGAT2Q10469 447 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 PCLAFQ15004 111 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 ERCC6LQ2NKX8 1250 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 PRICKLE4Q2TBC4 344 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 FAM180BQ6P0A1 224 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 GALNT18Q6P9A2 607 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 FAM111BQ6SJ93 734 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 BNC2Q6ZN30 1099 aaPredicted RBP13.65□□□□□ -0.22
USP28-204ENST00000537642 OR52N2Q8NGI0 321 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 C16orf78Q8WTQ4 265 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 KLHL29Q96CT2 875 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 SPACA9Q96E40 222 aaPredicted RBP13.65□□□□□ -0.22
USP28-204ENST00000537642 CNRIP1Q96F85 164 aaPredicted RBP13.65□□□□□ -0.22
USP28-204ENST00000537642 CCDC120Q96HB5 630 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 APOPT1Q96IL0 206 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 ZNF681Q96N22 645 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 FAM173AQ9BQD7 235 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 EBPLQ9BY08 206 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 SHCBP1LQ9BZQ2 653 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 ROPN1BQ9BZX4 212 aaPredicted RBP13.65□□□□□ -0.22
USP28-204ENST00000537642 OR10A5Q9H207 317 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 ROPN1Q9HAT0 212 aaPredicted RBP13.65□□□□□ -0.22
USP28-204ENST00000537642 SACM1LQ9NTJ5 587 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 SIRT5Q9NXA8 310 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 MAT2BQ9NZL9 334 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 MID2Q9UJV3 735 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 PSME2Q9UL46 239 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 DLGAP4Q9Y2H0 992 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 EXPH5Q8NEV8 1989 aa13.65□□□□□ -0.22
USP28-204ENST00000537642 NAV2Q8IVL1 2488 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 NCOA6Q14686 2063 aaPredicted RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 C2orf92A0A1B0GVN3 265 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 GNG14A0A1W2PPG7 69 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 GLSO94925 669 aaPredicted RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 P04436 131 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 ATP1B1P05026 303 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 FBXO45P0C2W1 286 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 CSNK2A2P19784 350 aaPredicted RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 COL8A1P27658 744 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 DNASE1L1P49184 302 aa13.64□□□□□ -0.23
USP28-204ENST00000537642 NR0B1P51843 470 aaKnown RBP13.64□□□□□ -0.23
USP28-204ENST00000537642 CASP6P55212 293 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms