RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 BRCC3P46736 316 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 PITPNBP48739 271 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 NDUFV3P56181 108 aaKnown RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 GMFBP60983 142 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 RPS27AP62979 156 aaKnown RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 ACY1Q03154 408 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 CRMP1Q14194 572 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 MEF2DQ14814 521 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 LASP1Q14847 261 aaKnown RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 WSCD2Q2TBF2 565 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 CCDC92Q53HC0 331 aaPredicted RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 EIPR1Q53HC9 387 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 TOR1AIP1Q5JTV8 583 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 REP15Q6BDI9 236 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 RAB12Q6IQ22 244 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 TATDN1Q6P1N9 297 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 CNSTQ6PJW8 725 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 BAIAP2L2Q6UXY1 529 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 LUZP1Q86V48 1076 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 ZNF584Q8IVC4 421 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 ZBED8Q8IZ13 594 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 PYROXD2Q8N2H3 581 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 CENPSQ8N2Z9 138 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 FBXL16Q8N461 479 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 ARL14Q8N4G2 192 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 C4orf32Q8N8J7 132 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 OR1B1Q8NGR6 318 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 OR4L1Q8NH43 312 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 URGCPQ8TCY9 931 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 SAP25Q8TEE9 199 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 SLC13A3Q8WWT9 602 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 FCGR1BQ92637 280 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 RAB39BQ96DA2 213 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 COG3Q96JB2 828 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 C1orf147Q96MC9 270 aaPredicted RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 NTMT1Q9BV86 223 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 ACPTQ9BZG2 426 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 XPO4Q9C0E2 1151 aaKnown RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 ATG10Q9H0Y0 220 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 ADNPQ9H2P0 1102 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 DCTPP1Q9H773 170 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 DDX28Q9NUL7 540 aaKnown RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 TAS2R16Q9NYV7 291 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 THYN1Q9P016 225 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 KCNN3Q9UGI6 736 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 CIDEBQ9UHD4 219 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 BCAP29Q9UHQ4 241 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 TRMT6Q9UJA5 497 aaKnown RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 APPL1Q9UKG1 709 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 PLA2G4CQ9UP65 541 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 NIP7Q9Y221 180 aaKnown RBP eCLIP2.21□□□□□ -2.06
CD44-238ENST00000534296 ABCC9O60706 1549 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 A0A0J9YVX5 310 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 GTPBP10A4D1E9 387 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 CFAP73A6NFT4 308 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 SLC9B1P1A6NJY1 282 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 ARHGEF33A8MVX0 844 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 KLLNB2CW77 178 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 K7ERI5 159 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 TLR4O00206 839 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 RASGRF2O14827 1237 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 TLX2O43763 284 aaPredicted RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 SLC4A1P02730 911 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 MELTFP08582 738 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 DNAH10OSP0CZ25 163 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 IL10P22301 178 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 EDNRAP25101 427 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 MAPK3P27361 379 aaPredicted RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 SFNP31947 248 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 HSPA1LP34931 641 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 ASMTP46597 345 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 ATP4BP51164 291 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 CNN1P51911 297 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 RPL27P61353 136 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 IL9RQ01113 521 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 GK2Q14410 553 aaPredicted RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 SMC1AQ14683 1233 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 SLC17A1Q14916 467 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 EXOSC7Q15024 291 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 PKN2Q16513 984 aaKnown RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 HAGHQ16775 308 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 HSP90AA5PQ58FG0 334 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 TCHHL1Q5QJ38 904 aaPredicted RBP2.2□□□□□ -2.06
CD44-238ENST00000534296 DCAF12Q5T6F0 453 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 IL23RQ5VWK5 629 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 PRAMEF7Q5VXH5 474 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 OLFM4Q6UX06 510 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 VITQ6UXI7 678 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 APOOLQ6UXV4 268 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 P4HA3Q7Z4N8 544 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 CEACAM19Q7Z692 300 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 RABEPKQ7Z6M1 372 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 LRRC49Q8IUZ0 686 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 KDM8Q8N371 416 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 SFRP1Q8N474 314 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 LRRC17Q8N6Y2 441 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 ZNF781Q8N8C0 355 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 TMEM185AQ8NFB2 350 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 OR1K1Q8NGR3 316 aa2.2□□□□□ -2.06
CD44-238ENST00000534296 DTD2Q96FN9 168 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms