RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PTGR1Q14914 329 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 AGKQ53H12 422 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CPTPQ5TA50 214 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 NDUFAF5Q5TEU4 345 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 ZNF517Q6ZMY9 492 aaPredicted RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 MSANTD1Q6ZTZ1 278 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 OVCH1Q7RTY7 1134 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 DTX1Q86Y01 620 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 ZNF595Q8IYB9 648 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 DSELQ8IZU8 1212 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CA13Q8N1Q1 262 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 MFSD4AQ8N468 514 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 SLC38A9Q8NBW4 561 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 OR51Q1Q8NH59 317 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CLIP3Q96DZ5 547 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 TEX37Q96LM6 180 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 SLC46A1Q96NT5 459 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 TSSK3Q96PN8 268 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 OR1F2PQ96R84 312 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 ZBTB18Q99592 522 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 MAPKAP1Q9BPZ7 522 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 SLC25A23Q9BV35 468 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 SORBS1Q9BX66 1292 aaKnown RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 ASPNQ9BXN1 380 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CLMPQ9H6B4 373 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 RPF2Q9H7B2 306 aaKnown RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 EFCAB1Q9HAE3 211 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 APMAPQ9HDC9 416 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 SLC52A3Q9NQ40 469 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 ATAD3AQ9NVI7 634 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 FBXW2Q9UKT8 454 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CES1P1Q9UKY3 287 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 G3BP2Q9UN86 482 aaKnown RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 EXO1Q9UQ84 846 aaKnown RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 NDUFAF1Q9Y375 327 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 LOXL2Q9Y4K0 774 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 TMEM184BQ9Y519 407 aaPredicted RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 PCDHA9Q9Y5H5 950 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CAPN7Q9Y6W3 813 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 CCDC88CQ9P219 2028 aa6.96□□□□□ -1.3
CD44-228ENST00000528455 NUP214P35658 2090 aaPredicted RBP6.96□□□□□ -1.3
CD44-228ENST00000528455 CELSR3Q9NYQ7 3312 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 A0A0G2JN53 185 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 LOC100653049A0A140TA62 436 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 SYNDIG1LA6NDD5 238 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 CCDC154A6NI56 674 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 SMAD7O15105 426 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 SCAMP2O15127 329 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 PGRMC2O15173 223 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 CFLARO15519 480 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 RRP8O43159 456 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 HNRNPCL1O60812 293 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 DNAJB6O75190 326 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 KRT34O76011 436 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 GPR75O95800 540 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 NTRK1P04629 796 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 CYC1P08574 325 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 T-ENOLP0DO92 83 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 COX4I1P13073 169 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 CPN2P22792 545 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 CERS1P27544 350 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 PIK3R1P27986 724 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 IL12AP29459 219 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 PPP2R1BP30154 601 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 S100A3P33764 101 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 HPCAL1P37235 193 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 ZFP36L2P47974 494 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 RASSF2P50749 326 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 HNRNPFP52597 415 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 HNRNPH2P55795 449 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 HSD17B7P56937 341 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 RAB38P57729 211 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 KCNK10P57789 538 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 MC1RQ01726 317 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 ACTN3Q08043 901 aaPredicted RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 RCAN2Q14206 197 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 MLC1Q15049 377 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 CEBPEQ15744 281 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 UGT8Q16880 541 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 PGS1Q32NB8 556 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 NKAIN1Q4KMZ8 207 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 COQ5Q5HYK3 327 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 ANXA8L1Q5VT79 327 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 PRAMEF17Q5VTA0 474 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 SLC48A1Q6P1K1 146 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 C19orf48Q6RUI8 117 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 PRSS41Q7RTY9 318 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 KRTCAP2Q8N6L1 136 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 FAM47BQ8NA70 645 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 PCYOX1LQ8NBM8 494 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 PLPP5Q8NEB5 264 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 OR4K14Q8NGD5 310 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 ZCCHC10Q8TBK6 192 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 DNAJB14Q8TBM8 379 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 FGF11Q92914 225 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 TBC1D20Q96BZ9 403 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 ERP27Q96DN0 273 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 SPDL1Q96EA4 605 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 MARK4Q96L34 752 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 GBP5Q96PP8 586 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms