RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SHISA5Q8N114 240 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 LRRC25Q8N386 305 aaPredicted RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 ZNF786Q8N393 782 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 EDAQ92838 391 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 MAP3K3Q99759 626 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 TREX2Q9BQ50 279 aaPredicted RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 IER2Q9BTL4 223 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 FAM192AQ9GZU8 254 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 NTMQ9P121 344 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 TRPC4Q9UBN4 977 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 NAALAD2Q9Y3Q0 740 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 LYVE1Q9Y5Y7 322 aa19.48■□□□□ 0.71
VPS28-209ENST00000528142 GOLGA4Q13439 2230 aaKnown RBP19.48■□□□□ 0.71
VPS28-209ENST00000528142 GON4LQ3T8J9 2241 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 CYR61O00622 381 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 ADAMDEC1O15204 470 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 SLC28A2O43868 658 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 MITFO75030 526 aaPredicted RBP19.47■□□□□ 0.71
VPS28-209ENST00000528142 SEC24DO94855 1032 aaPredicted RBP19.47■□□□□ 0.71
VPS28-209ENST00000528142 ITGA2P17301 1181 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 XCR1P46094 333 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 RAD23AP54725 363 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 COL9A2Q14055 689 aaPredicted RBP19.47■□□□□ 0.71
VPS28-209ENST00000528142 PUM1Q14671 1186 aaKnown RBP eCLIP19.47■□□□□ 0.71
VPS28-209ENST00000528142 DEFB110Q30KQ9 67 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 FAHD1Q6P587 224 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 TSSK4Q6SA08 328 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 GPR32P1Q8NGA4 272 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 OR4C15Q8NGM1 316 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 C16orf58Q96GQ5 468 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 C3orf14Q9HBI5 128 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 SH3GLB1Q9Y371 365 aa19.47■□□□□ 0.71
VPS28-209ENST00000528142 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 TMEM247A6NEH6 219 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 SLC16A6O15403 523 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 DNAJB5O75953 348 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 ATP6V1B1P15313 513 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 IGFBP5P24593 272 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 MAN2A2P49641 1150 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 ANXA11P50995 505 aaKnown RBP19.46■□□□□ 0.71
VPS28-209ENST00000528142 AFF3P51826 1226 aaKnown RBP19.46■□□□□ 0.71
VPS28-209ENST00000528142 C21orf59P57076 290 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 FUT5Q11128 374 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 PRTGQ2VWP7 1150 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 C14orf28Q4W4Y0 310 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 WDR45BQ5MNZ6 344 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 OR4N5Q8IXE1 308 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 CA13Q8N1Q1 262 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 ZNF555Q8NEP9 628 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 NUP43Q8NFH3 380 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 OR5T3Q8NGG3 340 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 KAT2AQ92830 837 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 GIMAP5Q96F15 307 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 YIPF4Q9BSR8 244 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 ANKRA2Q9H9E1 313 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 BCL2L10Q9HD36 194 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 TESMINQ9Y4I5 508 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 GPC6Q9Y625 555 aaPredicted RBP19.46■□□□□ 0.71
VPS28-209ENST00000528142 ENPP4Q9Y6X5 453 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 ABCA7Q8IZY2 2146 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 KNL1Q8NG31 2342 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 JRKO75564 520 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 NR2F1P10589 423 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 SOX18P35713 384 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 POLR2IP36954 125 aaKnown RBP19.46■□□□□ 0.71
VPS28-209ENST00000528142 KCNC4Q03721 635 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 LGI4Q8N135 537 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 TMEM52Q8NDY8 209 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 PIK3C3Q8NEB9 887 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 OTUB1Q96FW1 271 aaPredicted RBP19.46■□□□□ 0.71
VPS28-209ENST00000528142 TCTN2Q96GX1 697 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 ZNF607Q96SK3 696 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 NPLQ9BXD5 320 aaPredicted RBP19.46■□□□□ 0.71
VPS28-209ENST00000528142 ORC6Q9Y5N6 252 aa19.46■□□□□ 0.71
VPS28-209ENST00000528142 USP34Q70CQ2 3546 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 LOC100130705A0A1B0GUX0 176 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 TNFRSF11BO00300 401 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 KIF1CO43896 1103 aaKnown RBP19.45■□□□□ 0.7
VPS28-209ENST00000528142 SRPX2O60687 465 aaPredicted RBP19.45■□□□□ 0.7
VPS28-209ENST00000528142 FESP07332 822 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 PABPC4LP0CB38 370 aaKnown RBP19.45■□□□□ 0.7
VPS28-209ENST00000528142 ITGAMP11215 1152 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 CPMP14384 443 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 HOXA6P31267 233 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 YAP1P46937 504 aaKnown RBP19.45■□□□□ 0.7
VPS28-209ENST00000528142 KCNJ5P48544 419 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 FAM92BQ6ZTR7 304 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 ZNF605Q86T29 641 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 OR7G2Q8NG99 324 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 PIP5K1AQ99755 562 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 YTHDF1Q9BYJ9 559 aaKnown RBP19.45■□□□□ 0.7
VPS28-209ENST00000528142 EXD2Q9NVH0 621 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 DNAAF2Q9NVR5 837 aaKnown RBP19.45■□□□□ 0.7
VPS28-209ENST00000528142 KCNE3Q9Y6H6 103 aa19.45■□□□□ 0.7
VPS28-209ENST00000528142 J3KTA2 159 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 CHRM4P08173 479 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 PPP2R1BP30154 601 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 GABRA4P48169 554 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 THAP5Q7Z6K1 395 aa19.44■□□□□ 0.7
VPS28-209ENST00000528142 GALNT5Q7Z7M9 940 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms