RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ASPGQ86U10 573 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ACBD7Q8N6N7 88 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ZNF527Q8NB42 609 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 TSTD1Q8NFU3 115 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 SUN3Q8TAQ9 357 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ZFP90Q8TF47 636 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 RAD9AQ99638 391 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 TMEM30AQ9NV96 361 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ZNF69Q9UC07 566 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 BAIAP2Q9UQB8 552 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 GMEB1Q9Y692 573 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 DNMT3AQ9Y6K1 912 aaPredicted RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 EEF1E1O43324 174 aaKnown RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 ZNF432O94892 652 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ADAP00813 363 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 EMX1Q04741 257 aaPredicted RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 DECR1Q16698 335 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 SWI5Q1ZZU3 235 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ANKLE1Q8NAG6 615 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 DENND6BQ8NEG7 585 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ZNF431Q8TF32 576 aaPredicted RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 GAB3Q8WWW8 586 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 SPATA9Q9BWV2 254 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 SACM1LQ9NTJ5 587 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 TMEM5Q9Y2B1 443 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 CDH10Q9Y6N8 788 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 CPED1A4D0V7 1026 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ISPDA4D126 451 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 PLD2O14939 933 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 TOXO94900 526 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 SOX30O94993 753 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 S100A9P06702 114 aaKnown RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 VAMP1P23763 118 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 CRHBPP24387 322 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 OR3A3P47888 321 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 OR3A2P47893 321 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 MAD2L1BPQ15013 274 aaPredicted RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 THOC7Q6I9Y2 204 aaKnown RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 PLEKHG7Q6ZR37 379 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 SDR16C5Q8N3Y7 309 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 NUDT8Q8WV74 236 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 FAM46AQ96IP4 442 aaKnown RBP12.08□□□□□ -0.48
USP53-209ENST00000514665 SLC46A2Q9BY10 475 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 BTNL2Q9UIR0 455 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 WDR37Q9Y2I8 494 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 ITGB4P16144 1822 aa12.08□□□□□ -0.48
USP53-209ENST00000514665 SCN9AQ15858 1988 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 C1orf226A1L170 272 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 OR6C74A6NCV1 312 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 C5orf51A6NDU8 294 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 TMEM189-UBE2V1I3L0A0 370 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 EIF1AYO14602 144 aaKnown RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 ADRB3P13945 408 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 RAB28P51157 221 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 IRF5Q13568 498 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 CCDC36Q8IYA8 594 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 ZNF101Q8IZC7 436 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 OR51L1Q8NGJ5 315 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 OR2T11Q8NH01 316 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 NSMAFQ92636 917 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 RPL3LQ92901 407 aaKnown RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 RAB7BQ96AH8 199 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 MMABQ96EY8 250 aaPredicted RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 ZNF583Q96ND8 569 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 PAQR5Q9NXK6 330 aaPredicted RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 UPB1Q9UBR1 384 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 TJP1Q07157 1748 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 ADAMTSL3P82987 1691 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 OR52A4PA6NMU1 304 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 ZNF670-ZNF695F2Z2N8 137 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 CSTAP01040 98 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 STOMP27105 288 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 TAS2R38P59533 333 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 MAP4K2Q12851 820 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 VEZF1Q14119 521 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 ZNF181Q2M3W8 571 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 MANEALQ5VSG8 457 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 QSOX2Q6ZRP7 698 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 CEP68Q76N32 757 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 PSD4Q8NDX1 1056 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 LKAAEAR1Q8TD35 194 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 SLC2A11Q9BYW1 496 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 GORASP2Q9H8Y8 452 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 ZBTB20Q9HC78 741 aaPredicted RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 OLAHQ9NV23 265 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 CNIH4Q9P003 139 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 NLKQ9UBE8 527 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 IFT52Q9Y366 437 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 MAU2Q9Y6X3 613 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 A0A0X1KG70 313 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 OR14I1A6ND48 311 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 HHLA1C9JL84 531 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 C11orf98E9PRG8 122 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 TLX3O43711 291 aaPredicted RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 CAPNS1P04632 268 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 PFKLP17858 780 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 ATP5A1P25705 553 aaKnown RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 ARNTP27540 789 aa12.07□□□□□ -0.48
USP53-209ENST00000514665 RPS21P63220 83 aaKnown RBP12.07□□□□□ -0.48
USP53-209ENST00000514665 RELAQ04206 551 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms