RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 AQP1P29972 269 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 DCAF7P61962 342 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 SIM1P81133 766 aaPredicted RBP7.9□□□□□ -1.14
USP54-215ENST00000497106 DAG1Q14118 895 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 GTDC1Q4AE62 458 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 DCST1Q5T197 706 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 DEF8Q6ZN54 512 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 ZNF551Q7Z340 670 aaPredicted RBP7.9□□□□□ -1.14
USP54-215ENST00000497106 ARHGAP22Q7Z5H3 698 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 FAM20CQ8IXL6 584 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 ZNF440Q8IYI8 595 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 MAGEE2Q8TD90 523 aaPredicted RBP7.9□□□□□ -1.14
USP54-215ENST00000497106 ZNF583Q96ND8 569 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 PTCHD1Q96NR3 888 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 AMDHD1Q96NU7 426 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 OR2A5Q96R48 311 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 HCN3Q9P1Z3 774 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 AP4B1Q9Y6B7 739 aa7.9□□□□□ -1.14
USP54-215ENST00000497106 PRICKLE3O43900 615 aaPredicted RBP7.9□□□□□ -1.15
USP54-215ENST00000497106 FUCA1P04066 466 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 ST6GAL1P15907 406 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 PEX2P28328 305 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 CDC42P60953 191 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 MS4A2Q01362 244 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 OGFRL1Q5TC84 451 aaPredicted RBP7.9□□□□□ -1.15
USP54-215ENST00000497106 SAXO2Q658L1 398 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 FCRL6Q6DN72 434 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 TMEM214Q6NUQ4 689 aaKnown RBP7.9□□□□□ -1.15
USP54-215ENST00000497106 PPP1R3BQ86XI6 285 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 KCT2Q8NC54 265 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 OR7G1Q8NGA0 311 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 CNDP2Q96KP4 475 aaKnown RBP7.9□□□□□ -1.15
USP54-215ENST00000497106 PKP2Q99959 881 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 PNO1Q9NRX1 252 aaKnown RBP7.9□□□□□ -1.15
USP54-215ENST00000497106 KRT84Q9NSB2 600 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 WDR45Q9Y484 360 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 IGHV1OR21-1A0A087WYE8 117 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 A0A0A6YYC8 382 aaPredicted RBP7.9□□□□□ -1.15
USP54-215ENST00000497106 I3L1I5 382 aaPredicted RBP7.9□□□□□ -1.15
USP54-215ENST00000497106 SGK494L7N484 410 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 WNT1P04628 370 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 IFI6P09912 130 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 IL12BP29460 328 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 RORAP35398 523 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 IL18R1Q13478 541 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 ZNF311Q5JNZ3 666 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 CBLL1Q75N03 491 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 OFCC1Q8IZS5 231 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 RMND5BQ96G75 393 aaPredicted RBP7.9□□□□□ -1.15
USP54-215ENST00000497106 PEX11GQ96HA9 241 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 PILRBQ9UKJ0 227 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 MYRFQ9Y2G1 1151 aa7.9□□□□□ -1.15
USP54-215ENST00000497106 CEP290O15078 2479 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 A0A087WV62 115 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 A0A1B0GX78 115 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 PCDH17O14917 1159 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 PPM1DO15297 605 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 TMPRSS11DO60235 418 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 MPZL2O60487 215 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 DBIP07108 87 aaKnown RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 OR12D1P0DN82 309 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 IL7RP16871 459 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 FOLH1Q04609 750 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 LPCAT4Q643R3 524 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 FBXO42Q6P3S6 717 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 RNF111Q6ZNA4 994 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 OR14A16Q8NHC5 309 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 SNRNP27Q8WVK2 155 aaKnown RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 MTHFD2LQ9H903 347 aaPredicted RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 PRDM7Q9NQW5 492 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 TPRKBQ9Y3C4 175 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 PCYT1BQ9Y5K3 369 aaPredicted RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 PRR19A6NJB7 356 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 FXYD1O00168 92 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 GTPBP1O00178 669 aaKnown RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 DSCR3O14972 297 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 ZNF749O43361 778 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 GADD45GO95257 159 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 ETFAP13804 333 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 GSTM3P21266 225 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 IGFBP5P24593 272 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 CHN2P52757 468 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 CASP12Q6UXS9 341 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 ADGRG5Q8IZF4 528 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 VWA5B2Q8N398 1253 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 IFI44Q8TCB0 444 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 Q96MT0 163 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 TRIM4Q9C037 500 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 PDP1Q9P0J1 537 aaPredicted RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 NKX1-2Q9UD57 310 aaPredicted RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 BRINP1O60477 761 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 STX11O75558 287 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 OXSR1O95747 527 aaPredicted RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 JMJD7P0C870 316 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 RHCEP18577 417 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 PEBP1P30086 187 aaKnown RBP7.89□□□□□ -1.15
USP54-215ENST00000497106 MPLP40238 635 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 ALDH3A2P51648 485 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 PGDP52209 483 aa7.89□□□□□ -1.15
USP54-215ENST00000497106 ZNF267Q14586 743 aaPredicted RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms