RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TECRQ9NZ01 308 aaKnown RBP2.68□□□□□ -1.98
VPS50-219ENST00000495039 MRTO4Q9UKD2 239 aaKnown RBP2.68□□□□□ -1.98
VPS50-219ENST00000495039 MRPL11Q9Y3B7 192 aaKnown RBP2.68□□□□□ -1.98
VPS50-219ENST00000495039 A0A0U1RQG5 324 aaPredicted RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 YJEFN3A6XGL0 299 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 ATP6V1G1O75348 118 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 FRAT2O75474 233 aaPredicted RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 PRDM1O75626 825 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 GOSR1O95249 250 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 SEMA4FO95754 770 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 TXNDC12O95881 172 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 SFTPBP07988 381 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 HMOX1P09601 288 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 OR9G9P0C7N8 305 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 MBL2P11226 248 aaPredicted RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 MTIF2P46199 727 aaKnown RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 GEMP55040 296 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 CDKL1Q00532 357 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 NPRL3Q12980 569 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 GK2Q14410 553 aaPredicted RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 EMC2Q15006 297 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 ZNF506Q5JVG8 444 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 DCAF12Q5T6F0 453 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 LEMD1Q68G75 181 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 RTL6Q6ICC9 239 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 ARMCX5Q6P1M9 558 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 B3GLCTQ6Y288 498 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 Q6ZRG5 221 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 TOM1L2Q6ZVM7 507 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 CCDC71Q8IV32 467 aaPredicted RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 WDR49Q8IV35 697 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 MSANTD4Q8NCY6 345 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 BEST4Q8NFU0 473 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 OR6M1Q8NGM8 313 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 OR1K1Q8NGR3 316 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 FBXO25Q8TCJ0 367 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 RNASE8Q8TDE3 154 aaKnown RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 KRT35Q92764 455 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 GLYATL1Q969I3 302 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 SNX21Q969T3 373 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 FUNDC2Q9BWH2 189 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 DCLRE1BQ9H816 532 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 ELL3Q9HB65 397 aaPredicted RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 DNAJC11Q9NVH1 559 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 CLEC5AQ9NY25 188 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 MTRRQ9UBK8 725 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 EIF3KQ9UBQ5 218 aaKnown RBP2.67□□□□□ -1.98
VPS50-219ENST00000495039 KIF7Q2M1P5 1343 aa2.67□□□□□ -1.98
VPS50-219ENST00000495039 SH3PXD2BA1X283 911 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 RNF212BA8MTL3 300 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 MEI4A8MW99 385 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 E9PAM4 449 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 CCER2I3L3R5 266 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 SLC28A1O00337 649 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 KINO60870 393 aaKnown RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 RENP00797 406 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 PDGFBP01127 241 aaPredicted RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 IGKV3-11P04433 115 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 HCKP08631 526 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 MMP10P09238 476 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 UGT1A6P19224 532 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 CALML3P27482 149 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 PPP2R1BP30154 601 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 ELK3P41970 407 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 NSFP46459 744 aaKnown RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 RPL34P49207 117 aaKnown RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 SLC12A3P55017 1021 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 HERV-K104P63124 156 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 IGLV3-21P80748 117 aaPredicted RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 ARF5P84085 180 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 RPA4Q13156 261 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 CYLC2Q14093 348 aaPredicted RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 C2orf76Q3KRA6 126 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 VWA2Q5GFL6 755 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 UTF1Q5T230 341 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 REP15Q6BDI9 236 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 SERINC5Q86VE9 423 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 SERPINA12Q8IW75 414 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 SPC24Q8NBT2 197 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 CHDHQ8NE62 594 aaPredicted RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 OR4A16Q8NH70 328 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 ITLN1Q8WWA0 313 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 RBM18Q96H35 190 aaKnown RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 RPGRIP1Q96KN7 1286 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 MID1IP1Q9NPA3 183 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 ACOXLQ9NUZ1 547 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 VPS54Q9P1Q0 977 aa2.66□□□□□ -1.98
VPS50-219ENST00000495039 MRPS2Q9Y399 296 aaKnown RBP2.66□□□□□ -1.98
VPS50-219ENST00000495039 EEF2KO00418 725 aaKnown RBP2.65□□□□□ -1.99
VPS50-219ENST00000495039 CHEK1O14757 476 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 TSPAN2O60636 221 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 PNPP00491 289 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 HSD17B1P14061 328 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 FOSL2P15408 326 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 ZNF18P17022 549 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 OAS2P29728 719 aaKnown RBP2.65□□□□□ -1.99
VPS50-219ENST00000495039 MATKP42679 507 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 ACADSBP45954 432 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 BRCC3P46736 316 aa2.65□□□□□ -1.99
VPS50-219ENST00000495039 GALK2Q01415 458 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms