RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 PNPT1Q8TCS8 783 aaKnown RBP18.12■□□□□ 0.49
USP39-218ENST00000493829 RBM18Q96H35 190 aaKnown RBP18.12■□□□□ 0.49
USP39-218ENST00000493829 NAF1Q96HR8 494 aaKnown RBP18.12■□□□□ 0.49
USP39-218ENST00000493829 CNPPD1Q9BV87 410 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 SIRT3Q9NTG7 399 aaPredicted RBP18.12■□□□□ 0.49
USP39-218ENST00000493829 SLC25A37Q9NYZ2 338 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 TCFL5Q9UL49 500 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 VPS4AQ9UN37 437 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 FARSAQ9Y285 508 aaKnown RBP18.12■□□□□ 0.49
USP39-218ENST00000493829 A0A096LPI6 279 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 FXYD1O00168 92 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 HRKO00198 91 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 RAB40ALP0C0E4 278 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 LIPCP11150 499 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 OTX2P32243 289 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 OR4D2P58180 307 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 C6orf163Q5TEZ5 329 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 ANGPTL8Q6UXH0 198 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 DLEU7Q6UYE1 221 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 GALNT12Q8IXK2 581 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 MSRB3Q8IXL7 192 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 DPP10Q8N608 796 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 AMER2Q8N7J2 671 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 RBM15BQ8NDT2 890 aaKnown RBP18.12■□□□□ 0.49
USP39-218ENST00000493829 SIMC1Q8NDZ2 872 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 RIT1Q92963 219 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 NEUROD4Q9HD90 331 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 VAPAQ9P0L0 249 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 NEUROG3Q9Y4Z2 214 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 PCDHB14Q9Y5E9 798 aa18.12■□□□□ 0.49
USP39-218ENST00000493829 RNF103-CHMP3A0A140T963 221 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 C17orf105B2RV13 164 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.11■□□□□ 0.49
USP39-218ENST00000493829 NME6O75414 186 aaPredicted RBP18.11■□□□□ 0.49
USP39-218ENST00000493829 UNC5CO95185 931 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 PTPN6P29350 595 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 MNAT1P51948 309 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 CASP9P55211 416 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 LRRC74AQ0VAA2 488 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 TBC1D25Q3MII6 688 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 SFT2D3Q587I9 215 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 ZNF628Q5EBL2 1059 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 DTX1Q86Y01 620 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 PLPP5Q8NEB5 264 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 OR7G2Q8NG99 324 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 LRRC58Q96CX6 371 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 SLC35A5Q9BS91 424 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 TUBB6Q9BUF5 446 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 TRIM4Q9C037 500 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 GPN2Q9H9Y4 310 aaPredicted RBP18.11■□□□□ 0.49
USP39-218ENST00000493829 GID8Q9NWU2 228 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 MAT2BQ9NZL9 334 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 IL17BQ9UHF5 180 aa18.11■□□□□ 0.49
USP39-218ENST00000493829 C21orf140B9A014 251 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 PTPN4P29074 926 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 CHI3L1P36222 383 aaPredicted RBP18.1■□□□□ 0.49
USP39-218ENST00000493829 TRPC1P48995 793 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 PRKAG1P54619 331 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 MTPNP58546 118 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 SRSF6Q13247 344 aaKnown RBP18.1■□□□□ 0.49
USP39-218ENST00000493829 TP53BP2Q13625 1128 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 ZNF267Q14586 743 aaPredicted RBP18.1■□□□□ 0.49
USP39-218ENST00000493829 EXOSC7Q15024 291 aaKnown RBP18.1■□□□□ 0.49
USP39-218ENST00000493829 MLC1Q15049 377 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 PRICKLE4Q2TBC4 344 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 TRMT12Q53H54 448 aaKnown RBP18.1■□□□□ 0.49
USP39-218ENST00000493829 VWA5B2Q8N398 1253 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 ZNF578Q96N58 590 aaPredicted RBP18.1■□□□□ 0.49
USP39-218ENST00000493829 CXorf21Q9HAI6 301 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 ADAP2Q9NPF8 381 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 EQTNQ9NQ60 294 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 SEMA3GQ9NS98 782 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 ZCCHC3Q9NUD5 404 aaKnown RBP18.1■□□□□ 0.49
USP39-218ENST00000493829 DDX18Q9NVP1 670 aaKnown RBP18.1■□□□□ 0.49
USP39-218ENST00000493829 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.1■□□□□ 0.49
USP39-218ENST00000493829 ERVK-19Q9WJR5 959 aa18.1■□□□□ 0.49
USP39-218ENST00000493829 TERTO14746 1132 aaKnown RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 ERN1O75460 977 aaKnown RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 SEC24DO94855 1032 aaPredicted RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 KRT16P08779 473 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 HOXB9P17482 250 aaPredicted RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 IL10RAQ13651 578 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 SELPLGQ14242 412 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 LRIF1Q5T3J3 769 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 CPZQ66K79 652 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 PTPMT1Q8WUK0 201 aaPredicted RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 KIAA1143Q96AT1 154 aaPredicted RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 ROPN1LQ96C74 230 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 ELP4Q96EB1 424 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 FAM120BQ96EK7 910 aaKnown RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 CGREF1Q99674 301 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 PELOQ9BRX2 385 aaKnown RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 MSRB2Q9Y3D2 182 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 CLCA3PQ9Y6N3 262 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 LIFP15018 202 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 SSTR4P31391 388 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 SOX18P35713 384 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 NCALDP61601 193 aa18.09■□□□□ 0.49
USP39-218ENST00000493829 RPS26P62854 115 aaKnown RBP18.09■□□□□ 0.49
USP39-218ENST00000493829 MGAT2Q10469 447 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms