RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZNF615Q8N8J6 731 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 PSD4Q8NDX1 1056 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 NUBPLQ8TB37 319 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 C16orf78Q8WTQ4 265 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 CNRIP1Q96F85 164 aaPredicted RBP16.76■□□□□ 0.27
COL9A3-214ENST00000490398 GPR137Q96N19 417 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 GAL3ST4Q96RP7 486 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 PELOQ9BRX2 385 aaKnown RBP16.76■□□□□ 0.27
COL9A3-214ENST00000490398 TMEM109Q9BVC6 243 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 WWTR1Q9GZV5 400 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 NMRK1Q9NWW6 199 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 DLGAP4Q9Y2H0 992 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 CCL27Q9Y4X3 112 aa16.76■□□□□ 0.27
COL9A3-214ENST00000490398 CHRNGP07510 517 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 CCL3P10147 92 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 PORP16435 677 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-214ENST00000490398 TIA1P31483 386 aaKnown RBP eCLIP16.75■□□□□ 0.27
COL9A3-214ENST00000490398 GALNSP34059 522 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 MPEG1Q2M385 716 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 C4orf17Q53FE4 359 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 ZCCHC23Q6ZST2 131 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 GALNT12Q8IXK2 581 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 ZNF441Q8N8Z8 693 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 ADCY4Q8NFM4 1077 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 KLHL29Q96CT2 875 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 ART5Q96L15 291 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 TUBB1Q9H4B7 451 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 TIMMDC1Q9NPL8 285 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 DTX4Q9Y2E6 619 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 KLF13Q9Y2Y9 288 aaPredicted RBP16.75■□□□□ 0.27
COL9A3-214ENST00000490398 ZGRF1Q86YA3 2104 aa16.75■□□□□ 0.27
COL9A3-214ENST00000490398 TMEM233B4DJY2 109 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 DYRK3O43781 588 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 TYROBPO43914 113 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 HS6ST1O60243 411 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 TRIM13O60858 407 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 NME6O75414 186 aaPredicted RBP16.74■□□□□ 0.27
COL9A3-214ENST00000490398 ZNF24P17028 368 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 TRA2BP62995 288 aaKnown RBP16.74■□□□□ 0.27
COL9A3-214ENST00000490398 ACSM2AQ08AH3 577 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 FUT7Q11130 342 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 EXOSC7Q15024 291 aaKnown RBP16.74■□□□□ 0.27
COL9A3-214ENST00000490398 PRICKLE4Q2TBC4 344 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 ZNF791Q3KP31 576 aaPredicted RBP16.74■□□□□ 0.27
COL9A3-214ENST00000490398 SPDYAQ5MJ70 313 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 CES4AQ5XG92 561 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 ACSM2BQ68CK6 577 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 GALNT18Q6P9A2 607 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 TRIM46Q7Z4K8 759 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 FJX1Q86VR8 437 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 GPALPP1Q8IXQ4 340 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 FAM98AQ8NCA5 519 aaKnown RBP16.74■□□□□ 0.27
COL9A3-214ENST00000490398 C7orf57Q8NEG2 295 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 OR2M7Q8NG81 312 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 OR2T11Q8NH01 316 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 IQCGQ9H095 443 aaKnown RBP16.74■□□□□ 0.27
COL9A3-214ENST00000490398 OR10A5Q9H207 317 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 MAT2BQ9NZL9 334 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 SH3BGRL2Q9UJC5 107 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 FIS1Q9Y3D6 152 aa16.74■□□□□ 0.27
COL9A3-214ENST00000490398 POLR3HQ9Y535 204 aaPredicted RBP16.74■□□□□ 0.27
COL9A3-214ENST00000490398 TRGV8A0A0C4DH27 118 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 GNG14A0A1W2PPG7 69 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 ASNA1O43681 348 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 GUCY1B2O75343 617 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 LRATO95237 230 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 CLDN1O95832 211 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 UROSP10746 265 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 DEKP35659 375 aaKnown RBP16.73■□□□□ 0.27
COL9A3-214ENST00000490398 DNASE1L1P49184 302 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 C3AR1Q16581 482 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 KRT71Q3SY84 523 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 SPIN4Q56A73 249 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 CMPK2Q5EBM0 449 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 RTL4Q6ZR62 310 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 SLC29A4Q7RTT9 530 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 ZFP62Q8NB50 900 aaPredicted RBP16.73■□□□□ 0.27
COL9A3-214ENST00000490398 C16orf52Q8NHV5 167 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 EXOSC8Q96B26 276 aaKnown RBP16.73■□□□□ 0.27
COL9A3-214ENST00000490398 BRINP2Q9C0B6 783 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 ANKRA2Q9H9E1 313 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 SH2D2AQ9NP31 389 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 SIRT5Q9NXA8 310 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 ZNF639Q9UID6 485 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 UTS2RQ9UKP6 389 aa16.73■□□□□ 0.27
COL9A3-214ENST00000490398 EXO1Q9UQ84 846 aaKnown RBP16.73■□□□□ 0.27
COL9A3-214ENST00000490398 FAM166BA8MTA8 275 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 AZIN1O14977 448 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 ZG16O60844 167 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 CRCPO75575 148 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 CBX7O95931 251 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 ATP1B1P05026 303 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 ANXA4P09525 319 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-214ENST00000490398 PCSK2P16519 638 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 CSNK2A2P19784 350 aaPredicted RBP16.72■□□□□ 0.27
COL9A3-214ENST00000490398 COL8A1P27658 744 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 PIGAP37287 484 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 ETV4P43268 484 aa16.72■□□□□ 0.27
COL9A3-214ENST00000490398 MRPS35P82673 323 aaKnown RBP16.72■□□□□ 0.27
COL9A3-214ENST00000490398 KIAA0040Q15053 153 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms