RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-204	ENST00000474025	PRAMEF9	Q5VWM5	478 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	FAM45BP	Q6NSW5	357 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	UBE3D	Q7Z6J8	389 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ADGRE4P	Q86SQ3	457 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	LUZP2	Q86TE4	346 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	KRT78	Q8N1N4	520 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	NAT8L	Q8N9F0	302 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ACOT4	Q8N9L9	421 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	GABPB2	Q8TAK5	448 aa	Predicted RBP	4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	FAM45A	Q8TCE6	357 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ZPLD1	Q8TCW7	415 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ANKRD7	Q92527	254 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	DIO2	Q92813	273 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	PPWD1	Q96BP3	646 aa	Known RBP	4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	RHBDF1	Q96CC6	855 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	PERP	Q96FX8	193 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CERS2	Q96G23	380 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ART5	Q96L15	291 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	RILP	Q96NA2	401 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ZFP3	Q96NJ6	502 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	GNRHR2	Q96P88	292 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	DGAT2	Q96PD7	388 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	F2RL3	Q96RI0	385 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	GAL3ST4	Q96RP7	486 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CCL19	Q99731	98 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	EGFL8	Q99944	293 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SFXN3	Q9BWM7	321 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	MS4A8	Q9BY19	250 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	NT5DC2	Q9H857	520 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	PLAC1	Q9HBJ0	212 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	PRDM7	Q9NQW5	492 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	C6orf203	Q9P0P8	240 aa	Predicted RBP	4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ZNF490	Q9ULM2	529 aa	Predicted RBP	4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CORO1C	Q9ULV4	474 aa	Predicted RBP	4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	GUCA1B	Q9UMX6	200 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	EIF3L	Q9Y262	564 aa	Known RBP	4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	C15orf41	Q9Y2V0	281 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	VWA7	Q9Y334	891 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	OARD1	Q9Y530	152 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	NPFFR2	Q9Y5X5	522 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ABCA1	O95477	2261 aa		4.68	□□□□□ -1.66
SNRNP40-204	ENST00000474025	TENM1	Q9UKZ4	2725 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CHD3	Q12873	2000 aa	Known RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	OR6C76	A6NM76	312 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025		A8MXE2	369 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CASK	O14936	926 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CTIF	O43310	598 aa	Known RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	DYRK3	O43781	588 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	RCBTB2	O95199	551 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SNX4	O95219	450 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CNOT4	O95628	575 aa	Known RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CLPS	P04118	112 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CYP4B1	P13584	511 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ALOX15	P16050	662 aa	Predicted RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	EPOR	P19235	508 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	PTMS	P20962	102 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	FPR1	P21462	350 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	HIST1H1T	P22492	207 aa	Predicted RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CCKAR	P32238	428 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	CXCR5	P32302	372 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	MAP2K3	P46734	347 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	RPL21	P46778	160 aa	Known RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	MASP1	P48740	699 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	NAGLU	P54802	743 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SLC37A1	P57057	533 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	FBXW4	P57775	412 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	HERVK_113	P63132	956 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ERVK-8	P63133	956 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	DOC2A	Q14183	400 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	RCAN2	Q14206	197 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	TGFBI	Q15582	683 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	TSN	Q15631	228 aa	Known RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ACKR1	Q16570	336 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SPRED3	Q2MJR0	410 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	EIPR1	Q53HC9	387 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SPANXN3	Q5MJ09	141 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	WIPI1	Q5MNZ9	446 aa	Predicted RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	RNASEH2B	Q5TBB1	312 aa	Known RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	TRMT10B	Q6PF06	316 aa	Known RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	PLXDC2	Q6UX71	529 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	TMEM64	Q6YI46	380 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	RNF111	Q6ZNA4	994 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SLC29A4	Q7RTT9	530 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ADAMTSL2	Q86TH1	951 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	IGDCC3	Q8IVU1	814 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	OR4N5	Q8IXE1	308 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	PHC2	Q8IXK0	858 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ST13P4	Q8IZP2	240 aa	Predicted RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	GCNT2	Q8N0V5	402 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	TAGAP	Q8N103	731 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	ZNF441	Q8N8Z8	693 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	BBOF1	Q8ND07	529 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SRFBP1	Q8NEF9	429 aa	Known RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	C7orf57	Q8NEG2	295 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	FAM83F	Q8NEG4	500 aa	Predicted RBP	4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SPPL2A	Q8TCT8	520 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	DOK4	Q8TEW6	326 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	SLC44A1	Q8WWI5	657 aa		4.67	□□□□□ -1.66
SNRNP40-204	ENST00000474025	IGFBPL1	Q8WX77	278 aa		4.67	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms