RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 BCKDKO14874 412 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 SUSD5O60279 629 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 TOXO94900 526 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 RPS17P08708 135 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 ACVR2AP27037 513 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 ARL1P40616 181 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 SERPINB9P50453 376 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 RTL6Q6ICC9 239 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 RPS27LQ71UM5 84 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 DND1Q8IYX4 353 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 OR5M3Q8NGP4 307 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 UCK2Q9BZX2 261 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 WDR41Q9HAD4 459 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 CXorf21Q9HAI6 301 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 TMCO1Q9UM00 188 aa17.3■□□□□ 0.36
CCDC88B-206ENST00000473405 FIGNL2A6NMB9 653 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 LRATO95237 230 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 SBK3P0C264 359 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 CT62P0C5K7 136 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 COL6A2P12110 1019 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 POU3F2P20265 443 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 MSX1P28360 303 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 SSTR4P31391 388 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 MAN2A2P49641 1150 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 KCNJ2P63252 427 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 NTRK2Q16620 822 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 TSNAXIP1Q2TAA8 658 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 GGTA1PQ4G0N0 100 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 C10orf62Q5T681 223 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 FAM219BQ5XKK7 198 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 ACAD11Q709F0 780 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 LRRC25Q8N386 305 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 FAM13CQ8NE31 585 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 IFT81Q8WYA0 676 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 ATP6V1E2Q96A05 226 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 TTYH2Q9BSA4 534 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 TSPYL1Q9H0U9 437 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 ZFP64Q9NPA5 681 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 SPRR3Q9UBC9 169 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 ZNF180Q9UJW8 692 aa17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 CNOT11Q9UKZ1 510 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-206ENST00000473405 TRIM49D1C9J1S8 452 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 PPP6CO00743 305 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 HCN1O60741 890 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 SMIM24O75264 130 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 KRT38O76015 456 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 KLK1P06870 262 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 GLI4P10075 376 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 TBL3Q12788 808 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 SLC10A1Q14973 349 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 LETMD1Q6P1Q0 360 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 ZNF585AQ6P3V2 769 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 TMEM64Q6YI46 380 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 TAOK1Q7L7X3 1001 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 GALNT12Q8IXK2 581 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 TMEM151AQ8N4L1 468 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 OR4F6Q8NGB9 312 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 ZNF483Q8TF39 744 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 CHTF18Q8WVB6 975 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 MRPL57Q9BQC6 102 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 MRPL46Q9H2W6 279 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 FARSBQ9NSD9 589 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 RYDENQ9NUL5 291 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 CNIH4Q9P003 139 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 ADAM29Q9UKF5 820 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 BOKQ9UMX3 212 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 IKBKGQ9Y6K9 419 aa17.28■□□□□ 0.36
CCDC88B-206ENST00000473405 TRGV5A0A0B4J1U4 118 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 C2orf92A0A1B0GVN3 265 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 A8MT66 165 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 POC1B-GALNT4F8VUJ3 575 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 CNTFP26441 200 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 PIK3R1P27986 724 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 SERPINB3P29508 390 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 TLE4Q04727 773 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 FUT7Q11130 342 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 IFT88Q13099 833 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 TTC19Q6DKK2 380 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 B3GNT6Q6ZMB0 384 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 COMMD6Q7Z4G1 85 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 METTL4Q8N3J2 472 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 ZNF615Q8N8J6 731 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 UHMK1Q8TAS1 419 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 C1QTNF3Q9BXJ4 246 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 SLC6A15Q9H2J7 730 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 LDAHQ9H6V9 325 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 MCCC2Q9HCC0 563 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 KCNJ16Q9NPI9 418 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 ZNF225Q9UK10 706 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 ACAD8Q9UKU7 415 aa17.27■□□□□ 0.36
CCDC88B-206ENST00000473405 VPS13CQ709C8 3753 aa17.27■□□□□ 0.35
CCDC88B-206ENST00000473405 ZFHX3Q15911 3703 aa17.26■□□□□ 0.35
CCDC88B-206ENST00000473405 A0A0G2JNJ9 132 aa17.26■□□□□ 0.35
CCDC88B-206ENST00000473405 WDR1O75083 606 aa17.26■□□□□ 0.35
CCDC88B-206ENST00000473405 TRIM3O75382 744 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-206ENST00000473405 TSPAN8P19075 237 aa17.26■□□□□ 0.35
CCDC88B-206ENST00000473405 ADH7P40394 386 aa17.26■□□□□ 0.35
CCDC88B-206ENST00000473405 GALNT1Q10472 559 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-206ENST00000473405 RPS6KA2Q15349 733 aa17.26■□□□□ 0.35
CCDC88B-206ENST00000473405 SGO1Q5FBB7 561 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms