RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 UCN3Q969E3 161 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 ZNF597Q96LX8 424 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 CBLCQ9ULV8 474 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 PCDHGA11Q9Y5H2 935 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 FREM3P0C091 2139 aa20.74■□□□□ 0.91
USP4-208ENST00000464168 A0A0A6YYD5 115 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 LTA4HP09960 611 aaKnown RBP20.73■□□□□ 0.91
USP4-208ENST00000464168 PTX3P26022 381 aaPredicted RBP20.73■□□□□ 0.91
USP4-208ENST00000464168 GALNSP34059 522 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 BSGP35613 385 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 PAFAH1B1P43034 410 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 FBXW4P57775 412 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 GNG11P61952 73 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 FOXD4Q12950 439 aaPredicted RBP20.73■□□□□ 0.91
USP4-208ENST00000464168 DAZAP2Q15038 168 aaPredicted RBP20.73■□□□□ 0.91
USP4-208ENST00000464168 TBCELQ5QJ74 424 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 TMEM198Q66K66 360 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 BICRALQ6AI39 1079 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 MAATS1Q7Z4T9 603 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 MYLK4Q86YV6 388 aaPredicted RBP20.73■□□□□ 0.91
USP4-208ENST00000464168 LACC1Q8IV20 430 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 TAGAPQ8N103 731 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 GOT1L1Q8NHS2 421 aaPredicted RBP20.73■□□□□ 0.91
USP4-208ENST00000464168 DPH5Q9H2P9 285 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 DDX31Q9H8H2 851 aaKnown RBP20.73■□□□□ 0.91
USP4-208ENST00000464168 WHRNQ9P202 907 aa20.73■□□□□ 0.91
USP4-208ENST00000464168 ZNF629Q9UEG4 869 aaPredicted RBP20.73■□□□□ 0.91
USP4-208ENST00000464168 C2orf92A0A1B0GVN3 265 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 ACSL3O95573 720 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 GSTA2P09210 222 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 FAM58BPP0C7Q3 252 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 SLC35E2P0CK97 266 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 NR2F6P10588 404 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 CRABP2P29373 138 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 SSTR4P31391 388 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 ZNF136P52737 540 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 KBTBD12Q3ZCT8 623 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 FNDC7Q5VTL7 733 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 LIPJQ5W064 366 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 TBC1D1Q86TI0 1168 aaPredicted RBP20.72■□□□□ 0.91
USP4-208ENST00000464168 PPM1NQ8N819 430 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 TP53INP1Q96A56 240 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 NXNL1Q96CM4 212 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 LRRC46Q96FV0 321 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 ALPK1Q96QP1 1244 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 NAPGQ99747 312 aaPredicted RBP20.72■□□□□ 0.91
USP4-208ENST00000464168 ERP44Q9BS26 406 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 PRDM14Q9GZV8 571 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 UBQLN3Q9H347 655 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 DLL4Q9NR61 685 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 LYARQ9NX58 379 aaKnown RBP20.72■□□□□ 0.91
USP4-208ENST00000464168 MTRF1LQ9UGC7 380 aaKnown RBP20.72■□□□□ 0.91
USP4-208ENST00000464168 EDARQ9UNE0 448 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 IKBKGQ9Y6K9 419 aa20.72■□□□□ 0.91
USP4-208ENST00000464168 A0A1W2PS29 197 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 H0YIV9 168 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 TP53I11O14683 189 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 TRAPPC6AO75865 159 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 HPNP05981 417 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 CDK9P50750 372 aaKnown RBP20.71■□□□□ 0.91
USP4-208ENST00000464168 CALCOCO2Q13137 446 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 CUL3Q13618 768 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 SLMAPQ14BN4 828 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 RPS6KA2Q15349 733 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 VASNQ6EMK4 673 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 SPPL2AQ8TCT8 520 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 MBD6Q96DN6 1003 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 RILPQ96NA2 401 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 GNRHR2Q96P88 292 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 ANGPTL4Q9BY76 406 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 ACTR8Q9H981 624 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 CXorf21Q9HAI6 301 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 GRHL1Q9NZI5 618 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 FOXD3Q9UJU5 478 aaPredicted RBP20.71■□□□□ 0.91
USP4-208ENST00000464168 ANGPTL3Q9Y5C1 460 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 NPFFR2Q9Y5X5 522 aa20.71■□□□□ 0.91
USP4-208ENST00000464168 LRRC14BA6NHZ5 514 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 CAPN14A8MX76 684 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 PGRMC2O15173 223 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 SNX4O95219 450 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 AIFM1O95831 613 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 IL2RAP01589 272 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 DGKQP52824 942 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 NSUN5P2Q63ZY6 315 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 CYP20A1Q6UW02 462 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 PM20D2Q8IYS1 436 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 CENPLQ8N0S6 344 aaPredicted RBP20.7■□□□□ 0.9
USP4-208ENST00000464168 EPB41L4BQ9H329 900 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 GSX1Q9H4S2 264 aaPredicted RBP20.7■□□□□ 0.9
USP4-208ENST00000464168 SNX15Q9NRS6 342 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 RNF14Q9UBS8 474 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 SLC6A5Q9Y345 797 aa20.7■□□□□ 0.9
USP4-208ENST00000464168 FAM187AA6NFU0 413 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 SYCE1LA8MT33 242 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 TACR1P25103 407 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 ADAM8P78325 824 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 FUT7Q11130 342 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 SETDB1Q15047 1291 aa20.69■□□□□ 0.9
USP4-208ENST00000464168 CPSF6Q16630 551 aaKnown RBP eCLIP20.69■□□□□ 0.9
USP4-208ENST00000464168 PFKFB4Q16877 469 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms