RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	HIST2H2AC	Q16777	129 aa	Predicted RBP	10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	DEFB113	Q30KQ7	82 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	HIST2H2AA3	Q6FI13	130 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	TMEM64	Q6YI46	380 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	CAPN12	Q6ZSI9	719 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	CHSY3	Q70JA7	882 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	MAATS1	Q7Z4T9	603 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZNF615	Q8N8J6	731 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	FAM13C	Q8NE31	585 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	SPPL2A	Q8TCT8	520 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	UBE2E3	Q969T4	207 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	ADIPOR1	Q96A54	375 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	WDYHV1	Q96HA8	205 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	ART5	Q96L15	291 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZNF597	Q96LX8	424 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	GAL3ST4	Q96RP7	486 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	ANGPTL4	Q9BY76	406 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	ALG9	Q9H6U8	611 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	EXO5	Q9H790	373 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	DDX31	Q9H8H2	851 aa	Known RBP	10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	NUDT4	Q9NZJ9	180 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	PHF11	Q9UIL8	331 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	FOXD3	Q9UJU5	478 aa	Predicted RBP	10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	RNF112	Q9ULX5	631 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	C15orf41	Q9Y2V0	281 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	SPACA6	W5XKT8	324 aa		10.21	□□□□□ -0.77
PTPN7-204	ENST00000462815	FREM3	P0C091	2139 aa		10.21	□□□□□ -0.78
PTPN7-204	ENST00000462815	FN1	P02751	2386 aa	Known RBP	10.21	□□□□□ -0.78
PTPN7-204	ENST00000462815	C15orf38-AP3S2	A0A0A6YYH1	394 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	CD8B2	A6NJW9	211 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	KERA	O60938	352 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	AIFM1	O95831	613 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	EPX	P11678	715 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	STMN1	P16949	149 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	BMP7	P18075	431 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	CD53	P19397	219 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	S1PR1	P21453	382 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	GDF1	P27539	372 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	SSTR4	P31391	388 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	CASQ1	P31415	396 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	GP5	P40197	560 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	PTGDS	P41222	190 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	SLCO1A2	P46721	670 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	SORD	Q00796	357 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	FUT7	Q11130	342 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	ZNF267	Q14586	743 aa	Predicted RBP	10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	TBCEL	Q5QJ74	424 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	RNF111	Q6ZNA4	994 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815		Q71RC1	249 aa	Predicted RBP	10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	SLC29A4	Q7RTT9	530 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	CMC1	Q7Z7K0	106 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	ADGRE4P	Q86SQ3	457 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	C9orf106	Q8NAJ2	232 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	WDR20	Q8TBZ3	569 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	RIT1	Q92963	219 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	EXT2	Q93063	718 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	TP53INP1	Q96A56	240 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	RGMA	Q96B86	450 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	TSPAN17	Q96FV3	270 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	RBM18	Q96H35	190 aa	Known RBP	10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	RILP	Q96NA2	401 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	GNRHR2	Q96P88	292 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	SECISBP2	Q96T21	854 aa	Known RBP	10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	MTERF1	Q99551	399 aa	Known RBP	10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	NAPG	Q99747	312 aa	Predicted RBP	10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	CPNE1	Q99829	537 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	G6PC3	Q9BUM1	346 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	UGT2B28	Q9BY64	529 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	TRIM31	Q9BZY9	425 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	CXorf21	Q9HAI6	301 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	DTX4	Q9Y2E6	619 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	SNX24	Q9Y343	169 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	SLC6A5	Q9Y345	797 aa		10.2	□□□□□ -0.78
PTPN7-204	ENST00000462815	IQANK1	A0A1B0GTG1	560 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	LRRC14B	A6NHZ5	514 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	GLOD5	A6NK44	160 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815		H0YIV9	168 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	PGRMC2	O15173	223 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	ACSL3	O95573	720 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	IL18BP	O95998	194 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	HRG	P04196	525 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	SLC35E2	P0CK97	266 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	PTPN6	P29350	595 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	CASP3	P42574	277 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	NAGLU	P54802	743 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	SLC12A2	P55011	1212 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	RPS13	P62277	151 aa	Known RBP	10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	EIPR1	Q53HC9	387 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	DESI1	Q6ICB0	168 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	TMEM81	Q6P7N7	255 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	BIVM	Q86UB2	503 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	CXorf67	Q86X51	503 aa	Predicted RBP	10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	PM20D2	Q8IYS1	436 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	CENPL	Q8N0S6	344 aa	Predicted RBP	10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	LIX1	Q8N485	282 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	GOT1L1	Q8NHS2	421 aa	Predicted RBP	10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	LINC01560	Q8TB33	94 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	STAG3L4	Q8TBR4	150 aa		10.19	□□□□□ -0.78
PTPN7-204	ENST00000462815	DIO2	Q92813	273 aa		10.19	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms