RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 LGALS8O00214 317 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 RAB36O95755 333 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 PEPDP12955 493 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 ELAVL4P26378 380 aaKnown RBP11.11□□□□□ -0.63
CPSF3-202ENST00000460593 CORO1AP31146 461 aaKnown RBP11.11□□□□□ -0.63
CPSF3-202ENST00000460593 PTGER1P34995 402 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 WNT4P56705 351 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 SNRPGP62308 76 aaKnown RBP11.11□□□□□ -0.63
CPSF3-202ENST00000460593 MBTPS1Q14703 1052 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 CLEC12AQ5QGZ9 265 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 KIAA1841Q6NSI8 718 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 QSOX2Q6ZRP7 698 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 COMTD1Q86VU5 262 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 KIF18BQ86Y91 864 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 GPR32P1Q8NGA4 272 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 WDR48Q8TAF3 677 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 WDR20Q8TBZ3 569 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 ZC3HAV1LQ96H79 300 aaKnown RBP11.11□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF582Q96NG8 517 aaPredicted RBP11.11□□□□□ -0.63
CPSF3-202ENST00000460593 SOSTQ9BQB4 213 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 AIFM2Q9BRQ8 373 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 PLA2G12AQ9BZM1 189 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 EGLN3Q9H6Z9 239 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 ERVMER34-1Q9H9K5 563 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 KCTD5Q9NXV2 234 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 KCMF1Q9P0J7 381 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 C5AR2Q9P296 337 aa11.11□□□□□ -0.63
CPSF3-202ENST00000460593 FZD6O60353 706 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 TGFB1P01137 390 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 HOXD4P09016 255 aaPredicted RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 RHCEP18577 417 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 PRPH2P23942 346 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 THPOP40225 353 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 CCR6P51684 374 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 DCST1Q5T197 706 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 FAM27D1Q5T7N8 215 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 RAET1GQ6H3X3 334 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 BHLHB9Q6PI77 547 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 ARSKQ6UWY0 536 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 MACC1Q6ZN28 852 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 PRSS42Q7Z5A4 293 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 DDX53Q86TM3 631 aaKnown RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 OR4F15Q8NGB8 312 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 NEIL3Q8TAT5 605 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 TMEM163Q8TC26 289 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 SLC7A13Q8TCU3 470 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 AP3S1Q92572 193 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 RNFT2Q96EX2 444 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 KCNJ15Q99712 375 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 OR51B5Q9H339 312 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 IL20RAQ9UHF4 553 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 BTNL2Q9UIR0 455 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 PCDHGB7Q9Y5F8 929 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 NPIPB15A6NHN6 443 aaPredicted RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 M0R3H8 397 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 RGS11O94810 467 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 HLA-DQB1P01920 261 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 TPOP07202 933 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 PROS1P07225 676 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 HSD3B1P14060 373 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 MLLT1Q03111 559 aaPredicted RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 EEF1A2Q05639 463 aaKnown RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 GRM7Q14831 915 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 MEDAGQ5VYS4 303 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 C12orf73Q69YU5 71 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 TCTN3Q6NUS6 607 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 PGBD2Q6P3X8 592 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 FAM122CQ6P4D5 195 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 TRILQ7L0X0 811 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 THOC6Q86W42 341 aaKnown RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 CHCHD4Q8N4Q1 142 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 OR8J1Q8NGP2 316 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 MARC2Q969Z3 335 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 CHIAQ9BZP6 476 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 NKIRAS2Q9NYR9 191 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF282Q9UDV7 671 aaPredicted RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 CLCA2Q9UQC9 943 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 HELZP42694 1942 aaKnown RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 PIPSLA2A3N6 862 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 SEPT4O43236 478 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 TRIM3O75382 744 aaPredicted RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 NR2F6P10588 404 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 HMGB2P26583 209 aaKnown RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 TALDO1P37837 337 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 HMGA2P52926 109 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 GPR68Q15743 365 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 ZSWIM7Q19AV6 140 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 GGTA1PQ4G0N0 100 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 GPR139Q6DWJ6 353 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 OR52N2Q8NGI0 321 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 ASB11Q8WXH4 323 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 OR4K3Q96R72 315 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 PIGUQ9H490 435 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 RC3H2Q9HBD1 1191 aaKnown RBP11.1□□□□□ -0.63
CPSF3-202ENST00000460593 ZC4H2Q9NQZ6 224 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 NLGN3Q9NZ94 848 aa11.1□□□□□ -0.63
CPSF3-202ENST00000460593 OR2AG2A6NM03 316 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SLC9A3R1O14745 358 aaPredicted RBP11.09□□□□□ -0.63
CPSF3-202ENST00000460593 SOD1P00441 154 aa11.09□□□□□ -0.63
CPSF3-202ENST00000460593 CD3GP09693 182 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms