RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ZNF675Q8TD23 568 aa14.24□□□□□ -0.13
LDLR-202ENST00000455727 XAGE5Q8WWM1 108 aa14.24□□□□□ -0.13
LDLR-202ENST00000455727 SLIRPQ9GZT3 109 aaKnown RBP14.24□□□□□ -0.13
LDLR-202ENST00000455727 IRAK4Q9NWZ3 460 aa14.24□□□□□ -0.13
LDLR-202ENST00000455727 OR6C2Q9NZP2 312 aa14.24□□□□□ -0.13
LDLR-202ENST00000455727 ATG4BQ9Y4P1 393 aa14.24□□□□□ -0.13
LDLR-202ENST00000455727 TICRRQ7Z2Z1 1910 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3DA0A087WVF3 549 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3IA0A087WXS9 549 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3EA0A087X179 549 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3KA0A087X1G2 549 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3FA6NER0 549 aaPredicted RBP14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3LB9A6J9 549 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 C4orf51C9J302 202 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 LINC01565O15544 149 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3HP0C7X1 549 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 NDUFS1P28331 727 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 ALDH4A1P30038 563 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 SEC23BQ15437 767 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 SYT16Q17RD7 645 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TOR1AIP1Q5JTV8 583 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TMEM236Q5W0B7 351 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3GQ6DHY5 549 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3CQ6IPX1 549 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 WASH2PQ6VEQ5 465 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 SLC46A3Q7Z3Q1 461 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 FAM20CQ8IXL6 584 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TBC1D3Q8IZP1 549 aaPredicted RBP14.23□□□□□ -0.13
LDLR-202ENST00000455727 LINC00471Q8N535 108 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 TMEM145Q8NBT3 493 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 OR4D11Q8NGI4 311 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 RPL3LQ92901 407 aaKnown RBP14.23□□□□□ -0.13
LDLR-202ENST00000455727 ZHX1-C8orf76Q96EF9 292 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 DACH2Q96NX9 599 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 OR2M4Q96R27 311 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 BTBD2Q9BX70 525 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 FGF22Q9HCT0 170 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 SPHK1Q9NYA1 384 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 SCHIP1Q9P0W5 487 aaPredicted RBP14.23□□□□□ -0.13
LDLR-202ENST00000455727 TRPC4Q9UBN4 977 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 CES1P1Q9UKY3 287 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 A0A1W2PRQ8 180 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 PRSS38A1L453 326 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 PGRMC2O15173 223 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 AIREO43918 545 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 ADORA3P0DMS8 318 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 PIPP12273 146 aaPredicted RBP14.23□□□□□ -0.13
LDLR-202ENST00000455727 SLC15A1P46059 708 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 KIAA1024LP59773 190 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 CEBPEQ15744 281 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 RGS21Q2M5E4 152 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 SLX4IPQ5VYV7 408 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 SLC48A1Q6P1K1 146 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 DEF8Q6ZN54 512 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 OR56A1Q8NGH5 318 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 OR5D16Q8NGK9 328 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 SUN3Q8TAQ9 357 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 MRPL38Q96DV4 380 aaKnown RBP14.23□□□□□ -0.13
LDLR-202ENST00000455727 CNRIP1Q96F85 164 aaPredicted RBP14.23□□□□□ -0.13
LDLR-202ENST00000455727 FZD3Q9NPG1 666 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 RHBDL2Q9NX52 303 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 A4GNTQ9UNA3 340 aa14.23□□□□□ -0.13
LDLR-202ENST00000455727 A0A0G2JPF8 293 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 EPOPA6NHQ4 379 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 WASHC1A8K0Z3 465 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 HNRNPCL2B2RXH8 293 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 HNRNPCL3B7ZW38 293 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 CNOT3O75175 753 aaKnown RBP14.22□□□□□ -0.13
LDLR-202ENST00000455727 FHP07954 510 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 HNRNPCL4P0DMR1 293 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 MAT2AP31153 395 aaKnown RBP14.22□□□□□ -0.13
LDLR-202ENST00000455727 CLK1P49759 484 aaKnown RBP14.22□□□□□ -0.13
LDLR-202ENST00000455727 UGT2B15P54855 530 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 STXBP1P61764 594 aaKnown RBP14.22□□□□□ -0.13
LDLR-202ENST00000455727 HYAL1Q12794 435 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 ITGADQ13349 1161 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 TMEM201Q5SNT2 666 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 PPP2R2DQ66LE6 453 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 CD300LDQ6UXZ3 194 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 RBM45Q8IUH3 476 aaKnown RBP14.22□□□□□ -0.13
LDLR-202ENST00000455727 CENPSQ8N2Z9 138 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 VANGL1Q8TAA9 524 aaPredicted RBP14.22□□□□□ -0.13
LDLR-202ENST00000455727 ALOXE3Q9BYJ1 711 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 SLC6A14Q9UN76 642 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 SLC9A8Q9Y2E8 581 aa14.22□□□□□ -0.13
LDLR-202ENST00000455727 GOLGA4Q13439 2230 aaKnown RBP14.22□□□□□ -0.13
LDLR-202ENST00000455727 A0A1W2PQF6 199 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 GLOD5A6NK44 160 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 FAM227AF5H4B4 570 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 TOR1BO14657 336 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 SLC31A1O15431 190 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 PROM1O43490 865 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 OR10H3O60404 316 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 ADAM23O75077 832 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 ERAL1O75616 437 aaKnown RBP14.21□□□□□ -0.13
LDLR-202ENST00000455727 AIFM1O95831 613 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 LGI1O95970 557 aa14.21□□□□□ -0.13
LDLR-202ENST00000455727 HOXB3P14651 431 aaPredicted RBP14.21□□□□□ -0.13
LDLR-202ENST00000455727 CSNK2A2P19784 350 aaPredicted RBP14.21□□□□□ -0.13
LDLR-202ENST00000455727 TGM3Q08188 693 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms