RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 FLOT1O75955 427 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 OR6B1O95007 311 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 CXCL14O95715 111 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 PTBP3O95758 552 aaKnown RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 TGFAP01135 160 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 IFNB1P01574 187 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 ASNSP08243 561 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 F7P08709 466 aaPredicted RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 H2AFZP0C0S5 128 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 TRIM49P0CI25 452 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 TRIM49CP0CI26 452 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 CDH1P12830 882 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 KRT13P13646 458 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 CAPN2P17655 700 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 NR1D1P20393 614 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 CDH3P22223 829 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 ANXA13P27216 316 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 EPHA2P29317 976 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 SFTPDP35247 375 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 HNRNPFP52597 415 aaKnown RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 HUNKP57058 714 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 SRP54P61011 504 aaKnown RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 TNNC1P63316 161 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 GUCY2DQ02846 1103 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 MBTD1Q05BQ5 628 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 TAF10Q12962 218 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 SF3B4Q15427 424 aaKnown RBP eCLIP3.75□□□□□ -1.812e-7■■■■□ 25.8
VPS29-202ENST00000447578 ZSCAN26Q16670 478 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 CCNYL2Q5T2Q4 361 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 UNC5DQ6UXZ4 953 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 LEKR1Q6ZMV7 388 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 WDR88Q6ZMY6 472 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 H2AFVQ71UI9 128 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 ZNF720Q7Z2F6 126 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 GPR141Q7Z602 305 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 TAF8Q7Z7C8 310 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 RTN4RL2Q86UN3 420 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 VPS36Q86VN1 386 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 IFT20Q8IY31 132 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 FBXW8Q8N3Y1 598 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 LMNTD1Q8N9Z9 388 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 TMEM185AQ8NFB2 350 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 OR10Q1Q8NGQ4 319 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 OR1J1Q8NGS3 322 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 GOLGA5Q8TBA6 731 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 LNX1Q8TBB1 728 aaPredicted RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 AENQ8WTP8 325 aaKnown RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 IFT81Q8WYA0 676 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 TAAR1Q96RJ0 339 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 MYCBPQ99417 103 aaPredicted RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 KRT12Q99456 494 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 RIT2Q99578 217 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 SLC39A8Q9C0K1 460 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 TSPYL1Q9H0U9 437 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 DPH5Q9H2P9 285 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 GOLPH3Q9H4A6 298 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 RNF121Q9H920 327 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 FKRPQ9H9S5 495 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 RAVER2Q9HCJ3 691 aaKnown RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 GPN1Q9HCN4 374 aaPredicted RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 MRPL17Q9NRX2 175 aaKnown RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 MALT1Q9UDY8 824 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 ZDHHC2Q9UIJ5 367 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 DNPEPQ9ULA0 475 aa3.75□□□□□ -1.81
VPS29-202ENST00000447578 FOXA2Q9Y261 457 aaPredicted RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 BAZ2BQ9UIF8 2168 aaKnown RBP3.75□□□□□ -1.81
VPS29-202ENST00000447578 BRWD3Q6RI45 1802 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 KIF26BQ2KJY2 2108 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 TMEM129A0AVI4 362 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 TMEM150BA6NC51 233 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 GOLGA8IPA6NC78 632 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 ANKDD1BA6NHY2 528 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 GOLGA8JA6NMD2 632 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 C2orf81A6NN90 581 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 GOLGA8KD6RF30 607 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 F8VZ95 297 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 M0R296 226 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 BMPR1BO00238 502 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 TEX28O15482 410 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 RAD51CO43502 376 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 SCO2O43819 266 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 SSX5O60225 188 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 CCDC172P0C7W6 258 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 F3P13726 295 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 GOT1P17174 413 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 ACP1P24666 158 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 YWHABP31946 246 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 CSTF2P33240 577 aaKnown RBP eCLIP3.74□□□□□ -1.81
VPS29-202ENST00000447578 CETN2P41208 172 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 QARSP47897 775 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 NR0B1P51843 470 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 CNN1P51911 297 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 CDH11P55287 796 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 SLC26A5P58743 744 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 FKBP1BP68106 108 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 IRX4P78413 519 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 GCNT1Q02742 428 aa3.74□□□□□ -1.81
VPS29-202ENST00000447578 ILF3Q12906 894 aaKnown RBP eCLIP3.74□□□□□ -1.81
VPS29-202ENST00000447578 TRAP1Q12931 704 aaKnown RBP3.74□□□□□ -1.81
VPS29-202ENST00000447578 ITGB3BPQ13352 177 aaPredicted RBP3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms