RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CAPN14A8MX76 684 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 EMC8O43402 210 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 CREG1O75629 220 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 IFI6P09912 130 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 IL12AP29459 219 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 CCT3P49368 545 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 PRIM2P49643 509 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 HNRNPFP52597 415 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 RRADP55042 308 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 IGLV3-21P80748 117 aaPredicted RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 TXNL4AP83876 142 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 ZNF267Q14586 743 aaPredicted RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 CEBPEQ15744 281 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 REP15Q6BDI9 236 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 LCN10Q6JVE6 187 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 SLC29A4Q7RTT9 530 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 ANKRD37Q7Z713 158 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 LAPTM4BQ86VI4 370 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 DTX1Q86Y01 620 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 FUNDC1Q8IVP5 155 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 MORN4Q8NDC4 146 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 TMEM52Q8NDY8 209 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 OR7G1Q8NGA0 311 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 OR9A2Q8NGT5 310 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 SFXN5Q8TD22 340 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 ZNF675Q8TD23 568 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 MAGED4Q96JG8 741 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 FER1L6-AS2Q96M78 137 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 HOPXQ9BPY8 73 aaPredicted RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 SPTBN4Q9H254 2564 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 SPTBN2O15020 2390 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 A0A087WV62 115 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 TTC36A6NLP5 189 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 ZNF891A8MT65 544 aaPredicted RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 KLK10O43240 276 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 RRP9O43818 475 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 PRAMEF2O60811 474 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 GMNNO75496 209 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 STAMBPO95630 424 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 RECKO95980 971 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 AGR2O95994 175 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 CAPN3P20807 821 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 FRKP42685 505 aaPredicted RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 PRKAG1P54619 331 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 SNRPNP63162 240 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 MAP4K2Q12851 820 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 TRMT5Q32P41 509 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 ZNF385BQ569K4 471 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 FAM180BQ6P0A1 224 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 PAPD4Q6PIY7 484 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 SLC2A7Q6PXP3 512 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 TMEM107Q6UX40 140 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 TMEM64Q6YI46 380 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 RNF111Q6ZNA4 994 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 NDUFAF7Q7L592 441 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 ZNF551Q7Z340 670 aaPredicted RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 ARHGAP24Q8N264 748 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 DPP10Q8N608 796 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 OR5L2Q8NGL0 311 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 TSLPQ969D9 159 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 PPWD1Q96BP3 646 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 RCN3Q96D15 328 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 NAF1Q96HR8 494 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 ZNF681Q96N22 645 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 SLC35A5Q9BS91 424 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 THUMPD3Q9BV44 507 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 OR8D2Q9GZM6 311 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 AKIRIN1Q9H9L7 192 aaPredicted RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 CXorf21Q9HAI6 301 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 IL1RL2Q9HB29 575 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 CACYBPQ9HB71 228 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 ZCCHC3Q9NUD5 404 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 THUMPD1Q9NXG2 353 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 EXO1Q9UQ84 846 aaKnown RBP9.45□□□□□ -0.9
CD44-207ENST00000425428 MAN2B2Q9Y2E5 1009 aa9.45□□□□□ -0.9
CD44-207ENST00000425428 CFAP54Q96N23 3096 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 IGKV3D-11A0A0A0MRZ8 115 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 RNF103-CHMP3A0A140T963 221 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 DUXAA6NLW8 204 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 OR6C76A6NM76 312 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 B2RBV5 119 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 GYG2O15488 501 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 KLF7O75840 302 aaPredicted RBP9.44□□□□□ -0.9
CD44-207ENST00000425428 UBOX5O94941 541 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 ZCCHC18P0CG32 403 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 EFNA1P20827 205 aaPredicted RBP9.44□□□□□ -0.9
CD44-207ENST00000425428 CLCN2P51788 898 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 HBA1P69905 142 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 EEF1A2Q05639 463 aaKnown RBP9.44□□□□□ -0.9
CD44-207ENST00000425428 GNA13Q14344 377 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 SPRED3Q2MJR0 410 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 DNAL1Q4LDG9 190 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 TMEM205Q6UW68 189 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 DNAJC14Q6Y2X3 702 aaPredicted RBP9.44□□□□□ -0.9
CD44-207ENST00000425428 TREML1Q86YW5 311 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 CLECL1Q8IZS7 167 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 CLEC1AQ8NC01 280 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 NUP43Q8NFH3 380 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 ADCY4Q8NFM4 1077 aa9.44□□□□□ -0.9
CD44-207ENST00000425428 TNIP2Q8NFZ5 429 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms