RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 DDCP20711 480 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 ENDOUP21128 410 aaKnown RBP10.11□□□□□ -0.79
CUX1-205ENST00000425244 CNR2P34972 360 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 PTGER1P34995 402 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 PUM1Q14671 1186 aaKnown RBP eCLIP10.11□□□□□ -0.795e-7■■■□□ 14.6
CUX1-205ENST00000425244 MED22Q15528 200 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 ZNF404Q494X3 552 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 EOGTQ5NDL2 527 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 KLHL17Q6TDP4 642 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 LCTLQ6UWM7 567 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 UNC5DQ6UXZ4 953 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 FAM129CQ86XR2 697 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 CLIP4Q8N3C7 705 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 MAFAQ8NHW3 353 aaPredicted RBP10.11□□□□□ -0.79
CUX1-205ENST00000425244 SETD7Q8WTS6 366 aaKnown RBP10.11□□□□□ -0.79
CUX1-205ENST00000425244 COL21A1Q96P44 957 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 AIF1LQ9BQI0 150 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 TPSD1Q9BZJ3 242 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 OSGEPL1Q9H4B0 414 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 PLCXD1Q9NUJ7 323 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 ZNF229Q9UJW7 825 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 NCKAP1Q9Y2A7 1128 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 CARD8Q9Y2G2 431 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 C17orf113A0A1B0GUU1 675 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 LATO43561 262 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 OR1F1O43749 312 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 VEGFDO43915 354 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 OXSR1O95747 527 aaPredicted RBP10.11□□□□□ -0.79
CUX1-205ENST00000425244 IGFBP1P08833 259 aaPredicted RBP10.11□□□□□ -0.79
CUX1-205ENST00000425244 RHCEP18577 417 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 CHMP24386 653 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 TPMTP51580 245 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 LIM2P55344 173 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 ELOAQ14241 798 aaKnown RBP10.11□□□□□ -0.79
CUX1-205ENST00000425244 DEPDC1Q5TB30 811 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 PNCKQ6P2M8 343 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 ZNF765Q7L2R6 523 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 RBM45Q8IUH3 476 aaKnown RBP10.11□□□□□ -0.79
CUX1-205ENST00000425244 FRMD1Q8N878 549 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 DENND6BQ8NEG7 585 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 RLN3Q8WXF3 142 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 UCN3Q969E3 161 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 TM4SF18Q96CE8 201 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 LINC00615Q96LM1 132 aaPredicted RBP10.11□□□□□ -0.79
CUX1-205ENST00000425244 Q96MT0 163 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 TPK1Q9H3S4 243 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 TMCC3Q9ULS5 477 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 GPR34Q9UPC5 381 aa10.11□□□□□ -0.79
CUX1-205ENST00000425244 H3BN98 237 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 FFAR1O14842 300 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 OR10H3O60404 316 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 CNOT3O75175 753 aaKnown RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 TBX6O95947 436 aaPredicted RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 RECKO95980 971 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 RPLP0P05388 317 aaKnown RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 GABRB1P18505 474 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 GABRG2P18507 467 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 CBLP22681 906 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 SEPHS1P49903 392 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 CLCNKAP51800 687 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 CLDN2P57739 230 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 RPS3AP61247 264 aaKnown RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 RPS21P63220 83 aaKnown RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 KCNC4Q03721 635 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 DPTQ07507 201 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 IRF4Q15306 451 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 FBXO43Q4G163 708 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 OLIG3Q7RTU3 272 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 SLC46A3Q7Z3Q1 461 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 C6orf120Q7Z4R8 191 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 SLC22A16Q86VW1 577 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 OR5M11Q96RB7 305 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 SLC17A9Q9BYT1 436 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 XKR8Q9H6D3 395 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 MMP17Q9ULZ9 603 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 COL4A2P08572 1712 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 FAM170BA6NMN3 283 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 WASHC1A8K0Z3 465 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 H0Y8X5 98 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 PPM1DO15297 605 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 CAPN5O15484 640 aaPredicted RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 TBX1O43435 398 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 PLRG1O43660 514 aaKnown RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 SLC28A2O43868 658 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 TMPRSS11DO60235 418 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 KDM1AO60341 852 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 TPST2O60704 377 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 CD40LGP29965 261 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 CCR8P51685 355 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 CRISP1P54107 249 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 SLC13A2Q13183 592 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 HEPACAMQ14CZ8 416 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 WASH2PQ6VEQ5 465 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 USP43Q70EL4 1123 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 LRRTM4Q86VH4 590 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 FAM20CQ8IXL6 584 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 FAM160A2Q8N612 972 aaPredicted RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 WDR36Q8NI36 951 aaKnown RBP10.1□□□□□ -0.79
CUX1-205ENST00000425244 OR5P2Q8WZ92 322 aa10.1□□□□□ -0.79
CUX1-205ENST00000425244 NEURL3Q96EH8 262 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms