RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 EVC2Q86UK5 1308 aa2.83□□□□□ -1.96
LINC01040-201ENST00000425048 MAP3K5Q99683 1374 aa2.83□□□□□ -1.96
LINC01040-201ENST00000425048 ERBINQ96RT1 1412 aa2.83□□□□□ -1.96
LINC01040-201ENST00000425048 YTHDC2Q9H6S0 1430 aaKnown RBP2.83□□□□□ -1.96
LINC01040-201ENST00000425048 ATAD2BQ9ULI0 1458 aa2.83□□□□□ -1.96
LINC01040-201ENST00000425048 NACAE9PAV3 2078 aa2.83□□□□□ -1.96
LINC01040-201ENST00000425048 WDR62O43379 1518 aa2.83□□□□□ -1.96
LINC01040-201ENST00000425048 LMTK2Q8IWU2 1503 aa2.83□□□□□ -1.96
LINC01040-201ENST00000425048 CEP170Q5SW79 1584 aa2.83□□□□□ -1.96
LINC01040-201ENST00000425048 MYOM1P52179 1685 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 SHPRHQ149N8 1683 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 CHD2O14647 1828 aaKnown RBP2.82□□□□□ -1.96
LINC01040-201ENST00000425048 IGHV3-35A0A0C4DH35 117 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 LIN7AO14910 233 aaPredicted RBP2.82□□□□□ -1.96
LINC01040-201ENST00000425048 GPAA1O43292 621 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 MGRN1O60291 552 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 NEMFO60524 1076 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 N4BP1O75113 896 aaKnown RBP2.82□□□□□ -1.96
LINC01040-201ENST00000425048 ERLIN1O75477 346 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 BBOX1O75936 387 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 PDHBP11177 359 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 NNMTP40261 264 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 CDX1P47902 265 aaPredicted RBP2.82□□□□□ -1.96
LINC01040-201ENST00000425048 PPP1R3AQ16821 1122 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 IRGCQ6NXR0 463 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 C2orf66Q6UXQ4 117 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 BZW1Q7L1Q6 419 aaKnown RBP2.82□□□□□ -1.96
LINC01040-201ENST00000425048 OTUD6AQ7L8S5 288 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 CCDC170Q8IYT3 715 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 ELMOD1Q8N336 334 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 POMGNT2Q8NAT1 580 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 ERMNQ8TAM6 284 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 EXT2Q93063 718 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 SKA1Q96BD8 255 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 DTNBP1Q96EV8 351 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 CDHR1Q96JP9 859 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 ZNF558Q96NG5 402 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 TRIM4Q9C037 500 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 CUEDC2Q9H467 287 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 ZWILCHQ9H900 591 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 ABCC13Q9NSE7 274 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 QPCTLQ9NXS2 382 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 RCOR3Q9P2K3 495 aaPredicted RBP2.82□□□□□ -1.96
LINC01040-201ENST00000425048 RABL2AQ9UBK7 228 aaPredicted RBP2.82□□□□□ -1.96
LINC01040-201ENST00000425048 TTC41PQ6P2S7 1318 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 PHLPP2Q6ZVD8 1323 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 USP47Q96K76 1375 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 FGD6Q6ZV73 1430 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 EFCAB5A4FU69 1503 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 ARHGEF11O15085 1522 aa2.82□□□□□ -1.96
LINC01040-201ENST00000425048 OR5H15A6NDH6 313 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 PRSS46E5RG02 174 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 BOLA2-SMG1P6H3BVE0 249 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 CREB3O43889 395 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 PSMD10O75832 226 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 CCDC175P0C221 793 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 CA8P35219 290 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 CTAG1AP78358 180 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 SHHQ15465 462 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 LRRC23Q53EV4 343 aaPredicted RBP2.81□□□□□ -1.96
LINC01040-201ENST00000425048 C9orf152Q5JTZ5 239 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 BEND6Q5SZJ8 279 aaPredicted RBP2.81□□□□□ -1.96
LINC01040-201ENST00000425048 PLPP4Q5VZY2 271 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 GALNT17Q6IS24 598 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 C17orf107Q6ZR85 190 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 APOBEC3FQ8IUX4 373 aaKnown RBP2.81□□□□□ -1.96
LINC01040-201ENST00000425048 LRRC8AQ8IWT6 810 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 CCDC65Q8IXS2 484 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 SYCP3Q8IZU3 236 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 SLC7A5P1Q8MH63 180 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 CEND1Q8N111 149 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 CEP112Q8N8E3 955 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 MSANTD4Q8NCY6 345 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 C8orf46Q8TAG6 207 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 GIMAP1Q8WWP7 306 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 RSPH1Q8WYR4 309 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 YIPF3Q9GZM5 350 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 UBQLN3Q9H347 655 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 VCPKMTQ9H867 229 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 SLC40A1Q9NP59 571 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 MIS18AQ9NYP9 233 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 TMEM9Q9P0T7 183 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 RPS6KA6Q9UK32 745 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 SH3GLB1Q9Y371 365 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 ASB3Q9Y575 518 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 TIMM22Q9Y584 194 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 GMEB1Q9Y692 573 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 GRIN2DO15399 1336 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 SH3TC1Q8TE82 1336 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 CDHR2Q9BYE9 1310 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 POLR3AO14802 1390 aaPredicted RBP2.81□□□□□ -1.96
LINC01040-201ENST00000425048 UHRF1BP1Q6BDS2 1440 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 PPIP5K1Q6PFW1 1433 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 ARHGEF12Q9NZN5 1544 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 HECW2Q9P2P5 1572 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 TRPM1Q7Z4N2 1603 aa2.81□□□□□ -1.96
LINC01040-201ENST00000425048 MYH1P12882 1939 aa2.8□□□□□ -1.96
LINC01040-201ENST00000425048 FANCD2Q9BXW9 1451 aa2.8□□□□□ -1.96
LINC01040-201ENST00000425048 ARHGAP23Q9P227 1491 aa2.8□□□□□ -1.96
LINC01040-201ENST00000425048 FHOD3Q2V2M9 1422 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms