RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 MEP1AQ16819 746 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 ANKRD26P1Q6NSI1 321 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 HSDL2Q6YN16 418 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 C16orf47Q6ZP98 133 aaPredicted RBP11.6□□□□□ -0.55
SKA1-203ENST00000417656 RPS19BP1Q86WX3 136 aaKnown RBP11.6□□□□□ -0.55
SKA1-203ENST00000417656 C9orf40Q8IXQ3 194 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 LGI4Q8N135 537 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 OR9A2Q8NGT5 310 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 SENP5Q96HI0 755 aaPredicted RBP11.6□□□□□ -0.55
SKA1-203ENST00000417656 LMF1Q96S06 567 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 BRINP2Q9C0B6 783 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 AKTIPQ9H8T0 292 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 LIN28AQ9H9Z2 209 aaKnown RBP11.6□□□□□ -0.55
SKA1-203ENST00000417656 MEAF6Q9HAF1 191 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 SLC35C2Q9NQQ7 365 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 MAT2BQ9NZL9 334 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 PSME2Q9UL46 239 aa11.6□□□□□ -0.55
SKA1-203ENST00000417656 WBP11Q9Y2W2 641 aaKnown RBP11.6□□□□□ -0.55
SKA1-203ENST00000417656 HEMK1Q9Y5R4 338 aaPredicted RBP11.6□□□□□ -0.55
SKA1-203ENST00000417656 SPTA1P02549 2419 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 DYTNA2CJ06 578 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 OR5H15A6NDH6 313 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 HDAC3O15379 428 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 ZFAND5O76080 213 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 ASMTP46597 345 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 MLF1P58340 268 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 RNF4P78317 190 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 MRPS35P82673 323 aaKnown RBP11.59□□□□□ -0.55
SKA1-203ENST00000417656 PRICKLE4Q2TBC4 344 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 ZNF385BQ569K4 471 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 HSP90B2PQ58FF3 399 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 IL23RQ5VWK5 629 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 FAM111BQ6SJ93 734 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 RNF111Q6ZNA4 994 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 PRICKLE2Q7Z3G6 844 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 MAVSQ7Z434 540 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 WDR75Q8IWA0 830 aaKnown RBP11.59□□□□□ -0.55
SKA1-203ENST00000417656 FAM9CQ8IZT9 166 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 VWA5B2Q8N398 1253 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 Q8NA96 180 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 CATSPER1Q8NEC5 780 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 ADCY4Q8NFM4 1077 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 SUN3Q8TAQ9 357 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 PNPLA2Q96AD5 504 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 PPCDCQ96CD2 204 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 C7orf26Q96N11 449 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 BBS4Q96RK4 519 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 GAL3ST4Q96RP7 486 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 RNF32Q9H0A6 362 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 REEP4Q9H6H4 257 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 SLCO1B3Q9NPD5 702 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 ANKRD10Q9NXR5 420 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 STMN3Q9NZ72 180 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 ABI3Q9P2A4 366 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 ANAPC2Q9UJX6 822 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 CROCCQ5TZA2 2017 aa11.59□□□□□ -0.55
SKA1-203ENST00000417656 CFAP46Q8IYW2 2715 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 GOLGA8QA0A0J9YX86 632 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 GOLGA8OA6NCC3 632 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 TMEM200CA6NKL6 621 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 TRPC5OSA6NMA1 111 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 B8ZZF3 427 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 GOLGA8NF8WBI6 632 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 WWP2O00308 870 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 FCHO1O14526 889 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 SCAMP2O15127 329 aaKnown RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 PDPK1O15530 556 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 ITGA10O75578 1167 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 SORBS2O94875 1100 aaKnown RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 PRPS2P11908 318 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 PCSK2P16519 638 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 NTSP30990 170 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 SOX18P35713 384 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 HPCAL1P37235 193 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 TNFSF10P50591 281 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 SLC37A1P57057 533 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 EMX2Q04743 252 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 MGAT2Q10469 447 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 FUT7Q11130 342 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 DUSP8Q13202 625 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 MAD2L1Q13257 205 aaPredicted RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 TUBA3CQ13748 450 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 PDE7AQ13946 482 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 ZNF169Q14929 603 aaPredicted RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 EXOSC7Q15024 291 aaKnown RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 EBPQ15125 230 aaKnown RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 CEBPEQ15744 281 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 ZNF628Q5EBL2 1059 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 ZNF468Q5VIY5 522 aaPredicted RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 TUBA3EQ6PEY2 450 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 Q6ZS92 163 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 FAM47EQ6ZV65 393 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 CCDC116Q8IYX3 515 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 SAMD14Q8IZD0 417 aaPredicted RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 ARMC10Q8N2F6 343 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 OR8K3Q8NH51 312 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 PIWIL2Q8TC59 973 aaKnown RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 CKAP2Q8WWK9 683 aa11.58□□□□□ -0.56
SKA1-203ENST00000417656 CIDECQ96AQ7 238 aaPredicted RBP11.58□□□□□ -0.56
SKA1-203ENST00000417656 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms