RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 REEP3Q6NUK4 255 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 KLHL35Q6PF15 583 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 FAM92BQ6ZTR7 304 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 NUDT13Q86X67 352 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 PARP8Q8N3A8 854 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 ZNF540Q8NDQ6 660 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 MIPOL1Q8TD10 442 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 RGMAQ96B86 450 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 MENTQ9BUN1 341 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 ZNF717Q9BY31 904 aaPredicted RBP14.02□□□□□ -0.16
USP4-203ENST00000415188 ZNF556Q9HAH1 456 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 PHPT1Q9NRX4 125 aaPredicted RBP14.02□□□□□ -0.16
USP4-203ENST00000415188 SLC23A2Q9UGH3 650 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 B3GNT3Q9Y2A9 372 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 CA5BQ9Y2D0 317 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 FAM32AQ9Y421 112 aaKnown RBP14.02□□□□□ -0.16
USP4-203ENST00000415188 TESMINQ9Y4I5 508 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 ENPP4Q9Y6X5 453 aa14.02□□□□□ -0.16
USP4-203ENST00000415188 TRPM6Q9BX84 2022 aa14.02□□□□□ -0.17
USP4-203ENST00000415188 CHD6Q8TD26 2715 aa14.02□□□□□ -0.17
USP4-203ENST00000415188 TP53BP1Q12888 1972 aaPredicted RBP14.01□□□□□ -0.17
USP4-203ENST00000415188 CLEC3AO75596 197 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 DKK1O94907 266 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 MT-ND2P03891 347 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 ZNF12P17014 697 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 CD247P20963 164 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 NXPH1P58417 271 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 PIGFQ07326 219 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 MLC1Q15049 377 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 CTF1Q16619 201 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 UBE2UQ5VVX9 321 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 P3H2Q8IVL5 708 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 LGI4Q8N135 537 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 DENND6BQ8NEG7 585 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 TANKQ92844 425 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 MYDGFQ969H8 173 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 TM4SF18Q96CE8 201 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 CSF3RQ99062 836 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 WDR26Q9H7D7 661 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 ACSS1Q9NUB1 689 aaPredicted RBP14.01□□□□□ -0.17
USP4-203ENST00000415188 PLAGL1Q9UM63 463 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 MAP4K5Q9Y4K4 846 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 PCDHGA6Q9Y5G7 932 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 FREM2Q5SZK8 3169 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 DMXL2Q8TDJ6 3036 aa14.01□□□□□ -0.17
USP4-203ENST00000415188 C5orf58C9J3I9 102 aa14□□□□□ -0.17
USP4-203ENST00000415188 TMX2-CTNND1H3BSU7 103 aa14□□□□□ -0.17
USP4-203ENST00000415188 TLR4O00206 839 aa14□□□□□ -0.17
USP4-203ENST00000415188 TAF4O00268 1085 aa14□□□□□ -0.17
USP4-203ENST00000415188 NDUFS4O43181 175 aa14□□□□□ -0.17
USP4-203ENST00000415188 TNFSF14O43557 240 aa14□□□□□ -0.17
USP4-203ENST00000415188 WBP4O75554 376 aaKnown RBP14□□□□□ -0.17
USP4-203ENST00000415188 IFNW1P05000 195 aa14□□□□□ -0.17
USP4-203ENST00000415188 DRD2P14416 443 aa14□□□□□ -0.17
USP4-203ENST00000415188 GRK3P35626 688 aa14□□□□□ -0.17
USP4-203ENST00000415188 TRIM23P36406 574 aa14□□□□□ -0.17
USP4-203ENST00000415188 LIMS1P48059 325 aa14□□□□□ -0.17
USP4-203ENST00000415188 SERPINB10P48595 397 aa14□□□□□ -0.17
USP4-203ENST00000415188 ARFIP1P53367 373 aa14□□□□□ -0.17
USP4-203ENST00000415188 OCA2Q04671 838 aa14□□□□□ -0.17
USP4-203ENST00000415188 PRSS53Q2L4Q9 553 aa14□□□□□ -0.17
USP4-203ENST00000415188 TMEM35AQ53FP2 167 aa14□□□□□ -0.17
USP4-203ENST00000415188 KIAA1161Q6NSJ0 714 aa14□□□□□ -0.17
USP4-203ENST00000415188 Q6ZNX1 250 aa14□□□□□ -0.17
USP4-203ENST00000415188 ZNF605Q86T29 641 aa14□□□□□ -0.17
USP4-203ENST00000415188 P2RY8Q86VZ1 359 aa14□□□□□ -0.17
USP4-203ENST00000415188 TRIM69Q86WT6 500 aa14□□□□□ -0.17
USP4-203ENST00000415188 CCDC71Q8IV32 467 aaPredicted RBP14□□□□□ -0.17
USP4-203ENST00000415188 ENTHD1Q8IYW4 607 aa14□□□□□ -0.17
USP4-203ENST00000415188 SLC5A8Q8N695 610 aa14□□□□□ -0.17
USP4-203ENST00000415188 PSMA8Q8TAA3 256 aa14□□□□□ -0.17
USP4-203ENST00000415188 SAP25Q8TEE9 199 aa14□□□□□ -0.17
USP4-203ENST00000415188 RASSF5Q8WWW0 418 aa14□□□□□ -0.17
USP4-203ENST00000415188 KLK6Q92876 244 aa14□□□□□ -0.17
USP4-203ENST00000415188 ZBED6CLQ96FA7 236 aaPredicted RBP14□□□□□ -0.17
USP4-203ENST00000415188 FEVQ99581 238 aa14□□□□□ -0.17
USP4-203ENST00000415188 MYOCQ99972 504 aa14□□□□□ -0.17
USP4-203ENST00000415188 MAPKAP1Q9BPZ7 522 aa14□□□□□ -0.17
USP4-203ENST00000415188 CXorf36Q9H7Y0 433 aa14□□□□□ -0.17
USP4-203ENST00000415188 ANKHQ9HCJ1 492 aa14□□□□□ -0.17
USP4-203ENST00000415188 ACOT13Q9NPJ3 140 aa14□□□□□ -0.17
USP4-203ENST00000415188 TAS2R7Q9NYW3 318 aa14□□□□□ -0.17
USP4-203ENST00000415188 ACSL6Q9UKU0 697 aa14□□□□□ -0.17
USP4-203ENST00000415188 RNF6Q9Y252 685 aa14□□□□□ -0.17
USP4-203ENST00000415188 PCYT1BQ9Y5K3 369 aaPredicted RBP14□□□□□ -0.17
USP4-203ENST00000415188 A0A1W2PPV9 198 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 MPZL2O60487 215 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 RNGTTO60942 597 aaKnown RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 CCNB2O95067 398 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 PCDH8O95206 1070 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 TBX6O95947 436 aaPredicted RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 OPN1SWP03999 348 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 MASP1P48740 699 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 MANFP55145 182 aaKnown RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 CDH12P55289 794 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 PCBP4P57723 403 aaKnown RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 AQP6Q13520 282 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 CLCA4Q14CN2 919 aa13.99□□□□□ -0.17
USP4-203ENST00000415188 TBCEQ15813 527 aaPredicted RBP13.99□□□□□ -0.17
USP4-203ENST00000415188 EXOC3L2Q2M3D2 409 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms