RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 IL1RL2Q9HB29 575 aa5.93□□□□□ -1.46
USP54-202ENST00000413442 SACM1LQ9NTJ5 587 aa5.93□□□□□ -1.46
USP54-202ENST00000413442 TAS2R9Q9NYW1 312 aa5.93□□□□□ -1.46
USP54-202ENST00000413442 ZNF639Q9UID6 485 aa5.93□□□□□ -1.46
USP54-202ENST00000413442 ZNF225Q9UK10 706 aa5.93□□□□□ -1.46
USP54-202ENST00000413442 MRTO4Q9UKD2 239 aaKnown RBP5.93□□□□□ -1.46
USP54-202ENST00000413442 EMCNQ9ULC0 261 aa5.93□□□□□ -1.46
USP54-202ENST00000413442 FASNP49327 2511 aaKnown RBP5.93□□□□□ -1.46
USP54-202ENST00000413442 UBR5O95071 2799 aaPredicted RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 GTF3C1Q12789 2109 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ZGRF1Q86YA3 2104 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 HELZ2Q9BYK8 2649 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 A0A087WV62 115 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 A0A1B0GVC2 190 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 TMEM200CA6NKL6 621 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 TMEM114B3SHH9 223 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 MASP2O00187 686 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PLOD2O00469 737 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PRRG2O14669 202 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 BCKDKO14874 412 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PGRMC2O15173 223 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 TO15178 435 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PEX1O43933 1283 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PCDH7O60245 1069 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 HCN1O60741 890 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 LYPLA1O75608 230 aaPredicted RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 OR2J2O76002 312 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ZWINTO95229 277 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ETHE1O95571 254 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 HSPA4LO95757 839 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 AIFM1O95831 613 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 CELA2AP08217 269 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ANXA4P09525 319 aaPredicted RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 FBXO45P0C2W1 286 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PRPS2P11908 318 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ZNF24P17028 368 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 DDCP20711 480 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ELAVL4P26378 380 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 LCN1P31025 176 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 TIA1P31483 386 aaKnown RBP eCLIP5.92□□□□□ -1.46
USP54-202ENST00000413442 PTGER4P35408 488 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 GMPRP36959 345 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 SLCO1A2P46721 670 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 TDGF1P3P51864 188 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 SMSP52788 366 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ART3Q13508 389 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ZNF267Q14586 743 aaPredicted RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 SLC10A1Q14973 349 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 MLC1Q15049 377 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 NTRK2Q16620 822 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ERCC6LQ2NKX8 1250 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PRICKLE4Q2TBC4 344 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 EIF2S3LQ2VIR3 472 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 TNFAIP8L3Q5GJ75 292 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 SPDYAQ5MJ70 313 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 UBAP2Q5T6F2 1119 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 TMEM198Q66K66 360 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ZCCHC12Q6PEW1 402 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 SCIMPQ6UWF3 145 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 IL20RBQ6UXL0 311 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 CLNKQ7Z7G1 428 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 SPPL2CQ8IUH8 684 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 SULF2Q8IWU5 870 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 VWA5B2Q8N398 1253 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 C1orf52Q8N6N3 182 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 ZNF615Q8N8J6 731 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PSD4Q8NDX1 1056 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 CEP70Q8NHQ1 597 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.92□□□□□ -1.46
USP54-202ENST00000413442 RAB3IL1Q8TBN0 382 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 TCP10LQ8TDR4 215 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 EPS8L3Q8TE67 593 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 PHF10Q8WUB8 498 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 PPP3R2Q96LZ3 170 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ZNF681Q96N22 645 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 FRMD6Q96NE9 622 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 PRPF18Q99633 342 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 MESP1Q9BRJ9 268 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 TRIM4Q9C037 500 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 WWTR1Q9GZV5 400 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 OR10A5Q9H207 317 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 C3orf14Q9HBI5 128 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 SLC24A3Q9HC58 644 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ACKR4Q9NPB9 350 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 MYNNQ9NPC7 610 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 MIEF1Q9NQG6 463 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 SLC35C2Q9NQQ7 365 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 C1orf109Q9NX04 203 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 B4GALT7Q9UBV7 327 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 METRNQ9UJH8 293 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 ZNF223Q9UK11 482 aaPredicted RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 PRDM4Q9UKN5 801 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 BOKQ9UMX3 212 aaPredicted RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 DLGAP4Q9Y2H0 992 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 NTNG1Q9Y2I2 539 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 MRPS18CQ9Y3D5 142 aaKnown RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 TRAF6Q9Y4K3 522 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 CSAG2Q9Y5P2 127 aa5.92□□□□□ -1.46
USP54-202ENST00000413442 KLF2Q9Y5W3 355 aaPredicted RBP5.92□□□□□ -1.46
USP54-202ENST00000413442 NPFFR2Q9Y5X5 522 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms