RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 OR4F3Q6IEY1 312 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 RHBDD2Q6NTF9 364 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 ERICH5Q6P6B1 374 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 GALNT18Q6P9A2 607 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 TRIM40Q6P9F5 258 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 EID3Q8N140 333 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 SLC47A1Q96FL8 570 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 VPS50Q96JG6 964 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 EGLN2Q96KS0 407 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 KCNC2Q96PR1 638 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 PRPF18Q99633 342 aaKnown RBP12.65□□□□□ -0.38
LIMS1-204ENST00000409441 TBCDQ9BTW9 1192 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 ANKHQ9HCJ1 492 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 SLC6A13Q9NSD5 602 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 FOXJ2Q9P0K8 574 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 DNAJB9Q9UBS3 223 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 BTNL2Q9UIR0 455 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 NAALAD2Q9Y3Q0 740 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 GMEB1Q9Y692 573 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 C4orf51C9J302 202 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 H0YAE9 185 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 RTCAO00442 366 aaKnown RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 PLPP1O14494 284 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 EI24O14681 340 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 DSCR3O14972 297 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 SCAMP2O15127 329 aaKnown RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 GALR3O60755 368 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 SCN2BO60939 215 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 CPNE3O75131 537 aaKnown RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 STK17BO94768 372 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 SEMA3DO95025 777 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 TFAP2AP05549 437 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 ZNF23P17027 643 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 TIA1P31483 386 aaKnown RBP eCLIP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 SLC5A2P31639 672 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 RPL3P39023 403 aaKnown RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 CAPGP40121 348 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 ARFIP1P53367 373 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 NR1H2P55055 460 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 TUBA4AP68366 448 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 RAE1P78406 368 aaKnown RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 MYBPC3Q14896 1274 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 KCTD21Q4G0X4 260 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 IGF2-ASQ6U949 168 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 PRSS41Q7RTY9 318 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 ANKRD46Q86W74 232 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 METTL4Q8N3J2 472 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 SVOPLQ8N434 492 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 DHRSXQ8N5I4 330 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 METTL27Q8N6F8 245 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 C1orf52Q8N6N3 182 aaKnown RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 VPS37AQ8NEZ2 397 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 OR9A4Q8NGU2 314 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 RMND5BQ96G75 393 aaPredicted RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 RDH12Q96NR8 316 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 PANX1Q96RD7 426 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 SORBS1Q9BX66 1292 aaKnown RBP12.64□□□□□ -0.39
LIMS1-204ENST00000409441 SPRY4Q9C004 299 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 LHX9Q9NQ69 397 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 CDC14AQ9UNH5 594 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 V9GYQ6 96 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 ADAMTS20P59510 1910 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 DCHS1Q96JQ0 3298 aa12.64□□□□□ -0.39
LIMS1-204ENST00000409441 A0A1B0GX78 115 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 CDRT15L2A8MXV6 281 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 SGK494L7N484 410 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 MEN1O00255 615 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 UPK1AO00322 258 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 AHCYL1O43865 530 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 KLHL18O94889 574 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 PGM3O95394 542 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 ANXA4P09525 319 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-204ENST00000409441 GPX2P18283 190 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 ATP5A1P25705 553 aaKnown RBP12.63□□□□□ -0.39
LIMS1-204ENST00000409441 RORAP35398 523 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 BSGP35613 385 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 CDKN2CP42773 168 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 OR1D4P47884 311 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 AVPR1BP47901 424 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 ALDH3A2P51648 485 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 SH3BGRP55822 239 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-204ENST00000409441 DAG1Q14118 895 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 AMER3Q8N944 861 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 GALNT6Q8NCL4 622 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 TSPAN14Q8NG11 270 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 OR7A2PQ8NGA2 310 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 FBXO30Q8TB52 745 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 NCLNQ969V3 563 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 SDCCAG3Q96C92 435 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 COQ8BQ96D53 544 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 MVB12AQ96EY5 273 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 MMABQ96EY8 250 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-204ENST00000409441 QRFPRQ96P65 431 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 DUSP26Q9BV47 211 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 ZNF717Q9BY31 904 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-204ENST00000409441 ROGDIQ9GZN7 287 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 CLK4Q9HAZ1 481 aaKnown RBP12.63□□□□□ -0.39
LIMS1-204ENST00000409441 NTN4Q9HB63 628 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 ASCL3Q9NQ33 180 aa12.63□□□□□ -0.39
LIMS1-204ENST00000409441 TUBA8Q9NY65 449 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms