RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 NUP214P35658 2090 aaPredicted RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TET2Q6N021 2002 aaPredicted RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 CHD4Q14839 1912 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 hCG_38984A0A1B0GV85 526 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 SH3PXD2BA1X283 911 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 SIGLEC16A6NMB1 481 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ECE2O60344 883 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 DPM1O60762 260 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 RNASEH1O60930 286 aaKnown RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 FCN3O75636 299 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 OXTP01178 125 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 SERPING1P05155 500 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 HEXAP06865 529 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TNNT1P13805 278 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ATP1B2P14415 290 aaPredicted RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PDGFRAP16234 1089 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ACSL1P33121 698 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR3A4PP47883 348 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 LHX2P50458 406 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 CCR6P51684 374 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF131P52739 623 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 NKX2-5P52952 324 aaPredicted RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PRKAA2P54646 552 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 KCNK10P57789 538 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 KLHL30Q0D2K2 578 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PLCXD2Q0VAA5 305 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ST3GAL4Q11206 333 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PPFIA1Q13136 1202 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PRKG2Q13237 762 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ASAH1Q13510 395 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TAF5Q15542 800 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 EXT1Q16394 746 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 AANATQ16613 207 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 DEFB109BQ30KR1 87 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 COX19Q49B96 90 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TMEM52BQ4KMG9 183 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TCP11X2Q5H9J9 407 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PAGE2BQ5JRK9 111 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 C6orf141Q5SZD1 244 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ATPAF1Q5TC12 328 aaPredicted RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 REP15Q6BDI9 236 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ADALQ6DHV7 355 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TMEM184AQ6ZMB5 413 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 MCM10Q7L590 875 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TADA2BQ86TJ2 420 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC44A2Q8IWA5 706 aaPredicted RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TXLNBQ8N3L3 684 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 CARNMT1Q8N4J0 409 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 CCDC33Q8N5R6 958 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ESX1Q8N693 406 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 CYB561D1Q8N8Q1 229 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PPFIBP2Q8ND30 876 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR1B1Q8NGR6 318 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR8K5Q8NH50 307 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ART4Q93070 314 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 MYDGFQ969H8 173 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 FAM131CQ96AQ9 280 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 FAM120BQ96EK7 910 aaKnown RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 MASTLQ96GX5 879 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 HARBI1Q96MB7 349 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 Q96NJ1 140 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PRPF18Q99633 342 aaKnown RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 TMEM47Q9BQJ4 181 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 FAM103A1Q9BTL3 118 aaKnown RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ST6GALNAC5Q9BVH7 336 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 VN1R1Q9GZP7 353 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF350Q9GZX5 532 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 LMAN2LQ9H0V9 348 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ARRDC1-AS1Q9H2J1 176 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 ELAC1Q9H777 363 aaKnown RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 WDR41Q9HAD4 459 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 FAM207AQ9NSI2 230 aaPredicted RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 PRMT7Q9NVM4 692 aaPredicted RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 DDX18Q9NVP1 670 aaKnown RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 APOBEC3BQ9UH17 382 aaKnown RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 MTUS1Q9ULD2 1270 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 YTHDF2Q9Y5A9 579 aaKnown RBP-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR51B4Q9Y5P0 310 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 FMN2Q9NZ56 1722 aa-1.3□□□□□ -2.62
RNU6-540P-201ENST00000384622 FAM135BQ49AJ0 1406 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 CASKIN1Q8WXD9 1431 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 BRD4O60885 1362 aaPredicted RBP-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 JCADQ9P266 1359 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 MAPK8IP3Q9UPT6 1336 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 IGLV8-61A0A075B6I0 122 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 LOC390937A0A1W2PQ73 354 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 A0A1W2PRG6 482 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 FAM92AA1XBS5 289 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 FRMD3A2A2Y4 597 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 TSPY2A6NKD2 308 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 TMEM189-UBE2V1I3L0A0 370 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 J3QR06 171 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 SLC1A7O00341 560 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 GOLIM4O00461 696 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 UPK2O00526 184 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 LECT2O14960 151 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 PIP5K1BO14986 540 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 PLOD3O60568 738 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR6A2O95222 327 aa-1.31□□□□□ -2.62
RNU6-540P-201ENST00000384622 KRT75O95678 551 aa-1.31□□□□□ -2.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms