RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NLRC3Q7RTR2 1065 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 CAMKMTQ7Z624 323 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 BHLHE22Q8NFJ8 381 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 OR2L8Q8NGY9 312 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 TMEM79Q9BSE2 394 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 CHODLQ9H9P2 273 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 DLGAP4Q9Y2H0 992 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 hCG_2014768A0A024R1R8 64 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ELOVL7A1L3X0 281 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 H0YJX3 145 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SMAD6O43541 496 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 FAM189BP81408 668 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ST3GAL1Q11201 340 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 NDUFA5Q16718 116 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 OR5M10Q6IEU7 315 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 NXPE4Q6UWF7 544 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 TMEM107Q6UX40 140 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 RASGEF1CQ8N431 466 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 RAXQ9Y2V3 346 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PCDHGB2Q9Y5G2 931 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF878C9JN71 531 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ANKRD65E5RJM6 399 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PIP5K1BO14986 540 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 LRRC37A3O60309 1634 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 F7P08709 466 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 DBTP11182 482 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 PSMB9P28065 219 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 CSNK1A1P48729 337 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 NUDT6P53370 316 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 YOD1Q5VVQ6 348 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 RTN4RL1Q86UN2 441 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 MMP21Q8N119 569 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 FBXO25Q8TCJ0 367 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 SPTSSAQ969W0 71 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 ZUFSPQ96AP4 578 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 NKX3-1Q99801 234 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 DPH2Q9BQC3 489 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 HINT2Q9BX68 163 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 FGFBP2Q9BYJ0 223 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 TAS2R7Q9NYW3 318 aa8.75□□□□□ -1.01
LIMCH1-202ENST00000381753 IGKV6-21A0A0C4DH24 114 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 EFCAB9A8MZ26 197 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 TNFRSF10CO14798 259 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 FDXRP22570 491 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 POLR2JP52435 117 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 REP15Q6BDI9 236 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 MZT2AQ6P582 158 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 LRRC55Q6ZSA7 311 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 BBS10Q8TAM1 723 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 CDK15Q96Q40 435 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 PCDHB18PQ96TA0 734 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 STOX2Q9P2F5 926 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 C9JVG2 144 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 PLOD3O60568 738 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 PRKCIP41743 596 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 SCARB2Q14108 478 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 NCBP2-AS2Q69YL0 99 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 SPESP1Q6UW49 350 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 GPR141Q7Z602 305 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 YIPF7Q8N8F6 280 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 NUP37Q8NFH4 326 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 OR10H4Q8NGA5 316 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 THAP4Q8WY91 577 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 TANKQ92844 425 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF775Q96BV0 537 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 GPATCH1Q9BRR8 931 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 TFB2MQ9H5Q4 396 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 NINJ2Q9NZG7 142 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 IGKV6D-21A0A0A0MT36 114 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 EMC8O43402 210 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 CRYAAP02489 173 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 DRD2P14416 443 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 BPIP17213 487 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 ENPP1P22413 925 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 ARL3P36405 182 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 MDH1P40925 334 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC26A5P58743 744 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 OLFML1Q6UWY5 402 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 NAT14Q8WUY8 206 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC47A1Q96FL8 570 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 RPP25Q9BUL9 199 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 CHST8Q9H2A9 424 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF587BE7ETH6 402 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 ITIH1P19827 911 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 GPR3P46089 330 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 YAP1P46937 504 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 ERVPABLB-1P60509 514 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 SLC5A9Q2M3M2 681 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 ZMAT1Q5H9K5 638 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 UNQ6494/PRO21346Q6UXR6 183 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 PROKR1Q8TCW9 393 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 PDXPQ96GD0 296 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 PHB2Q99623 299 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 C1QTNF6Q9BXI9 259 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 B3GNT4Q9C0J1 378 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 PCDHGA1Q9Y5H4 931 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 CAPN6Q9Y6Q1 641 aa8.74□□□□□ -1.01
LIMCH1-202ENST00000381753 AK1P00568 194 aa8.73□□□□□ -1.01
LIMCH1-202ENST00000381753 FAM58BPP0C7Q3 252 aa8.73□□□□□ -1.01
LIMCH1-202ENST00000381753 ZNF806P0C7X5 589 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms