RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 DUX4L5P0CJ88 424 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 DUX4L6P0CJ89 424 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 DUX4L7P0CJ90 424 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 C4BPBP20851 252 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 MMP12P39900 470 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 TXNL4AP83876 142 aaKnown RBP12.55□□□□□ -0.4
NPHP4-203ENST00000378169 HOXC5Q00444 222 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 ACVR1Q04771 509 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 FAM180AQ6UWF9 173 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 MSANTD1Q6ZTZ1 278 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 ACOT4Q8N9L9 421 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 TMIEQ8NEW7 156 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 OR8J1Q8NGP2 316 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 EFHD2Q96C19 240 aaPredicted RBP12.55□□□□□ -0.4
NPHP4-203ENST00000378169 GPER1Q99527 375 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 LHPPQ9H008 270 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 TM7SF3Q9NS93 570 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 CENPMQ9NSP4 180 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 DUX4Q9UBX2 424 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 PCDHA9Q9Y5H5 950 aa12.55□□□□□ -0.4
NPHP4-203ENST00000378169 CCRL2O00421 344 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 CSTAP01040 98 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 HRH2P25021 359 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 RPS15AP62244 130 aaKnown RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ELOCQ15369 112 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ZFP69Q49AA0 526 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 LNX2Q8N448 690 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ZNF527Q8NB42 609 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ZNF300Q96RE9 604 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 SECISBP2Q96T21 854 aaKnown RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ASPNQ9BXN1 380 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TCF7L1Q9HCS4 588 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TIGARQ9NQ88 270 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 CKLFQ9UBR5 152 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TRIOBPQ9H2D6 2365 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 DOCK1Q14185 1865 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 K7ESM1 405 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 WBP4O75554 376 aaKnown RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ZNF823P16415 610 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 PORP16435 677 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 SLC15A1P46059 708 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TMBIM6P55061 237 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 VEZF1Q14119 521 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 LCN1P1Q5VSP4 162 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ZC3H14Q6PJT7 736 aaKnown RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 SHFQ7M4L6 423 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 NUP54Q7Z3B4 507 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 OR9A2Q8NGT5 310 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 NKD1Q969G9 470 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 NXPE3Q969Y0 559 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 STARD5Q9NSY2 213 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 PAK1IP1Q9NWT1 392 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 GPR34Q9UPC5 381 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 DOCK5Q9H7D0 1870 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 COL11A2P13942 1736 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 UBE2QL1A1L167 161 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 PEX11BO96011 259 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TFAP2AP05549 437 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 DDCP20711 480 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 CDK5R2Q13319 367 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 CPZQ66K79 652 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 Q6ZSR6 202 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 SERPINA11Q86U17 422 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 SLC22A16Q86VW1 577 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ZNF548Q8NEK5 533 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 PHOSPHO2Q8TCD6 241 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 OSTF1Q92882 214 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 PKMYT1Q99640 499 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TRIM2Q9C040 744 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 P2RY12Q9H244 342 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 GORASP2Q9H8Y8 452 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 POLE4Q9NR33 117 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 KLHL33A6NCF5 533 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 RNASET2O00584 256 aaKnown RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 HLA-DPB1P04440 258 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 FCER2P06734 321 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 GBX2P52951 348 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 NRG3P56975 720 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 CTBSQ01459 385 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 LSAMPQ13449 338 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 SPHARQ15513 63 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 WSCD2Q2TBF2 565 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 ADNP2Q6IQ32 1131 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 LCTLQ6UWM7 567 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TTLL10Q6ZVT0 673 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 SLC29A4Q7RTT9 530 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 LIMS2Q7Z4I7 341 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 NANOGNBQ7Z5D8 188 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TMEM102Q8N9M5 508 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-203ENST00000378169 FAM3CQ92520 227 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 PIK3R3Q92569 461 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 TESCQ96BS2 214 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 IL21Q9HBE4 155 aa12.54□□□□□ -0.4
NPHP4-203ENST00000378169 OR5K4A6NMS3 321 aa12.53□□□□□ -0.4
NPHP4-203ENST00000378169 PLOD2O00469 737 aa12.53□□□□□ -0.4
NPHP4-203ENST00000378169 PROM1O43490 865 aa12.53□□□□□ -0.4
NPHP4-203ENST00000378169 NOS1APO75052 506 aaPredicted RBP12.53□□□□□ -0.4
NPHP4-203ENST00000378169 CCR2P41597 374 aa12.53□□□□□ -0.4
NPHP4-203ENST00000378169 OR12D2P58182 307 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms